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Invasion Biology Ontology

Release 02.02.2023

This version:
https://w3id.org/inbio/1.1
Latest version:
https://w3id.org/inbio
Previous version:
None
Revision:
1.1.0
Authors:
Alsayed Algergawy, (Friedrich-Schiller-Universität Jena)
Merle Gänßinger, (Friedrich-Schiller-Universität Jena)
Tina Heger, (Freie Universität Berlin, Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB))
Jonathan Jeschke, (Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB))
Birgitta König-Ries, (Friedrich-Schiller-Universität Jena)
Contributors:
Ria Stangeh, (Friedrich-Schiller-Universität Jena)
Publisher:
Alsayed Algergawy, (Friedrich-Schiller-Universität Jena)
Imported Ontologies:
Cerrado (ccon)
Basic Formal Ontology (BFO)
Chemical Entities of Biological Interest (CHEBI)
Geographical Entity Ontology (GEO)
Gene Ontology (GO)
NCBI organismal classification (NCBI)
Ontology for Biomedical Investigations (OBI)
Phenotype And Trait Ontology (PATO)
Population and Community Ontology (PCO)
Relation Ontology (RO)
Uberon multi-species anatomy ontology (UBERON)
Dublin Core (DC)
Web Ontology Language (OWL)
Resource Description Framework (RDF)
Extensible Markup Language (XML)
XML Schema Definition (XSD)
Friend of a Friend (FOAF)
Resource Description Framework Schema (RDFS)
Simple Knowledge Organisation System (SKOS)
The Extensible Observation Ontology (OBOE)
License:
https://creativecommons.org/licenses/by-nc-sa/4.0/ License
Visualization:
Visualize with WebVowl
Cite as:
Retrieved from: https://doi.org/10.5281/zenodo.6826848
DOI:
https://doi.org/10.5281/zenodo.6826848
Compatible with:
None
Ontology Specification Draft
The Invasion Biology Ontology (INBIO) contains terms and concepts relevant in the field of invasion biology, which is a research area dealing with the translocation, establishment, spread, impact and management of species outside of their native ranges, where they are called non-native or alien species. This first version of the ontology covers terms and concepts needed to describe twelve major invasion hypotheses building the hierarchical hypothesis network (see also Jeschke JM, Heger T (Eds) (2018) Invasion Biology: Hypotheses and Evidence. CABI, Wallingford, UK).
Diagram with important classes and concepts of the ontology

Cross-reference for Invasion Biology Ontology classes, object properties and data properties back to ToC

This section provides details for each class and property defined by Invasion Biology Ontology.

Classes

absencec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000075

Not existing in a specified place at a specified time.
has super-classes
status c
is disjoint with
successful c, presence c, in progress c

actinopterygiic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7898

has super-classes
euteleostomi c, pisces c

advective transport processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001334

Advective processes are disjoint from diffusive processes. Typically, fluids are advected.
A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
has super-classes
material transport process c
has sub-classes
mass liquid flow c

aggregate of contiguous land massesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000369

is equivalent to
is aggregate of op some land mass c
has super-classes
land mass c
has sub-classes
aggregate of islands c

aggregate of islandsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000390

is equivalent to
aggregate of contiguous land masses c and (has part op some island c)
has super-classes
aggregate of contiguous land masses c

airc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00002005

The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth.
has super-classes
gaseous environmental material c

algaec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000057

has super-classes
taxon c
has sub-classes
chlorarachniophyceae c, chlorophyta c, cryptophyceae c, dinophyceae c, euglenida c, glaucocystophyceae c, haptophyta c, rhodophyta c, stramenopiles c
is disjoint with
viruses c, bacteria c, archaea c, protozoa c

alien rangec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000037

An area in which a species occurs even though it lies outside its native range.
is equivalent to
range c and (is alien range to op some species c)
has super-classes
range c
is disjoint with
native range c

alien speciesc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000053

Species whose presence in a region is attributable to human actions that enable them to overcome biogeographical barriers.
is equivalent to
species c and (completed invasion phase op some invasion transport phase c)
species c and (has alien range op some area c)
has super-classes
species c
has sub-classes
invasive species c, non-invasive species c
is in domain of
achieves op, completed invasion phase op, has propagule pressure op, is in invasion phase op, shows changes in species trait op
is in range of
facilitate op
is disjoint with
native species c

allocationc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000067

after https://www.thefreedictionary.com/allocation
To set apart or re-distribute for a special purpose
has super-classes
process c
is disjoint with
community dynamics c, environmental system process c, involvement c, human activity c, invasion c

alveolatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33630

has super-classes
sar c
has sub-classes
dinophyceae c

amniotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32524

has super-classes
tetrapoda c
has sub-classes
mammalia c, sauropsida c
is disjoint with
amphibia c

amorphousc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001332

A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology.
has super-classes
morphology c
is disjoint with
shape c

amphibiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8292

has super-classes
tetrapoda c
is disjoint with
amniota c

analysis subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000008

An ontology module that is intended for usage in analysis or discovery applications.
has super-classes
ontology slim subset ontology module c

anatomical entity environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_2100000

An environment which is determined by an anatomical entity.
Is deprecated
true
has super-classes
environmental system c

anatomical structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0000061

Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome.
has super-classes
morphological feature c
is disjoint with
color c

animal diversityc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000052

Variety of animal species present in a location
has super-classes
biodiversity c
is disjoint with
plant diversity c, genetic diversity c

animal nutrientc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000063

chemical element required by animals to perform functions necessary for life
has super-classes
nutrient c

animal-associated environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001002

An environmental system determined by an animal.
has super-classes
environmental system determined by an organism c
has sub-classes
environment associated with an aquatic invertebrate c

anthropisationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000952

An area may be classified as anthropized even though it looks natural, such as grasslands that have been deforested by humans. It can be difficult to determine how much a site has been anthropized in the case of urbanization because one must be able to estimate the state of the landscape before significant human action.
A process during which a natural environmental system is altered by human action.
is equivalent to
anthropogenic ecosystem conversion process c and (has input op some natural environment c) and (has output op some anthropogenic environment c)
anthropogenic environmental process c and (has input op some natural environment c) and (has output op some anthropogenic environment c)
has super-classes
anthropogenic ecosystem conversion process c, anthropogenic environmental process c

anthropogenic disturbancec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000092

disturbance brought about by human activity
is equivalent to
disturbance c and human activity c and (occurs in op some ecosystem c)
has super-classes
disturbance c, human activity c
is disjoint with
natural disturbance c

anthropogenic ecosystem conversion processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001434

A process during which an ecosystem - natural or anthropised - is changed by the actions of humans.
has super-classes
anthropogenic environmental process c
has sub-classes
anthropisation c

anthropogenic environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000313

Unsatisfactory definition here. Must consider the threshold that makes an environmental system anthropogenic.
An anthropogenic environment is an environmental system which is the product of human activity.
is equivalent to
environmental system c and (output of op some human activity c)
has super-classes
environmental system c
is disjoint with
natural environment c

anthropogenic environmental processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_02500027

An environmental process which is driven by the action of humans.
is equivalent to
environmental system process c and (output of op some human activity c)
has super-classes
environmental system process c
has sub-classes
anthropisation c, anthropogenic ecosystem conversion process c

anthropogenic geographic featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000002

An anthropogenic geographic feature is a geographic feature resulting from the influence of human beings on nature.
is equivalent to
geographic feature c and (output of op some human activity c)
has super-classes
geographic feature c

antislimc back to ToC or Class ToC

exclusion subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000010

A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes.
has super-classes
ontology slim subset ontology module c

aquatic environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000317

An environment whose dynamics are strongly influenced by water.
has super-classes
environmental system c, environmental system determined by a material c, environmental system determined by a quality c

aquatic estuarine layerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001301

A layer of liquid that is part of an estuary.
is equivalent to
aquatic layer c and (part of op some estuary c)
has super-classes
aquatic layer c

aquatic layerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000325

This class will eventually be populated by inference, and its asserted subclasses removed.
A layer in a water mass, itself composed primarily of water.
has super-classes
liquid layer c
has sub-classes
aquatic estuarine layer c, marine layer c, water surface c

aquatic natural environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001227

A natural environment which is within a water body.
is equivalent to
natural environment c and (part of op some body of water c)
has super-classes
natural environment c
is disjoint with
terrestrial natural environment c

archaeac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2157

has super-classes
taxon c
is disjoint with
viruses c, bacteria c, eukaryota c, protozoa c, algae c

archelosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1329799

has super-classes
sauria c
has sub-classes
archosauria c, testudinata c

archosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8492

has super-classes
archelosauria c
has sub-classes
crocodylia c, dinosauria c

areac back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000026

A geographical region that can include land as well as water.
has super-classes
conceptual entity c
is in domain of
has amount of closely related species dp, is alien range to op, is native range to op, is range of op
is in range of
has alien range op, has area op, has distribution op, has native range op, has range op, is absent op
is disjoint with
impact c, phenotype c, benefit c, event c, status c, taxon c, system c, propagule pressure c, invasion phase c, estimate c, trait c, invasion success c

area unitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UO_0000047

A unit which is a standard measure of the amount of a 2-dimensional flat surface.
has super-classes
measurement unit label c

arthropodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6656

has super-classes
panarthropoda c
has sub-classes
mandibulata c

atmospherec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000267

An atmosphere is a layer of gases surrounding a material body of sufficient mass that is held in place by the gravity of the body.
has super-classes
layer c
is disjoint with
surface layer c, solid layer c

atmospheric processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_02500003

This class will be populated by inference and is primarily organisational.
A process which occurs within an atmosphere.
is equivalent to
environmental system process c and (occurs in op some atmosphere c)
has super-classes
environmental system process c

atmospheric water vapourc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000268

Atmospheric water vapour is water vapour that is part of an atmosphere.
is equivalent to
water vapour c and (part of op some atmosphere c)
has super-classes
water vapour c

atmospheric zonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001299

An environmental zone which is part of an atmosphere.
is equivalent to
environmental zone c and (part of op some atmosphere c)
has super-classes
environmental zone c
is disjoint with
ecoregion c, ecozone c, coast c, terrestrial environmental zone c, marine environmental zone c

average annual precipitationc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#Precipitation

Any product of the condensation of atmospheric water vapour that falls under gravity (http://en.wikipedia.org/wiki/Precipitation)
has super-classes
environmental condition c
is in domain of
decreases op, increases op
is disjoint with
fire incidence c, mean annual temperature c, pH c, humidity c, nutrient content c

avesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8782

has super-classes
coelurosauria c

bacteriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2

has super-classes
taxon c
is disjoint with
viruses c, archaea c, eukaryota c, protozoa c, algae c

base ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000001

An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies.
has super-classes
ontology file ontology module c

behavioural changec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000073

Any change in the behaviour of a species
has super-classes
change in individual c
is disjoint with
genetic change c

benefitc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25387

The positive effects of something.
has super-classes
conceptual entity c
is disjoint with
site c, impact c, phenotype c, place c, event c, taxon c, origin c, zone c, system c, propagule pressure c, area c, invasion phase c, estimate c, range c, trait c, invasion success c

beta diversityc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000066

from https://en.wikipedia.org/wiki/Beta_diversity
In ecology, beta diversity (β-diversity or true beta diversity) is the ratio between regional and local species diversity.
has super-classes
biodiversity c
is disjoint with
genetic diversity c

beta diversity indexc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000029

metric for estimating beta diversity
has super-classes
diversity index c

bilateriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33213

has super-classes
opisthokonta c
has sub-classes
deuterostomia c, protostomia c
is disjoint with
fungi c

biodiversityc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#Biodiversity

It's the degree of veriation of life forms within a given species, ecosystem, biome, or planet. Source: wikipedia.org
The biological variation found in a defined spatial area: can refer to variation at the level of genome, phenotype, species, community or ecosystem.
has super-classes
diversity c
has sub-classes
animal diversity c, beta diversity c, genetic diversity c, plant diversity c, species diversity c, species evenness c, species richness c
is in domain of
has index op, has value op
is in range of
has increased levels of op

biological processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0008150

Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
is equivalent to
process c and (has participant op some organism c)
has super-classes
process c
has sub-classes
ecosystem process c, growth c, host organism interaction c, reproduction c

biospherec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000817

The gravitational sphere of influence referenced in this class' definition is the Hill sphere: a region in which an object dominates the attraction of satellites despite gravitational perturbations.
A biosphere is a part of an astronomical body which includes, as parts, all the living entities within the gravitational sphere of influence of that body, as well as the non-living and dead entities with which they interact.
has super-classes
environmental system c

birth ratec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000077

The rate in which new borns are added to a population, or in other words, the number of new borns over time.
is equivalent to
life history trait c and (is natality of op some population c)
has super-classes
life history trait c
is in domain of
is natality of op
is in range of
has natality op
is disjoint with
death rate c, longevity c, generation length c

body of waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000063

https://en.wikipedia.org/wiki/ The term body of water most often refers to large accumulations of water, such as oceans, seas, and lakes, but it includes smaller pools of water such as ponds, wetlands, or more rarely, puddles. A body of water does not have to be still or contained; Rivers, streams, canals, and other geographical features where water moves from one place to another are also considered bodies of water.
An accumulation of water of varying size.
is equivalent to
geographical region c and (has part op some liquid water c)
has super-classes
geographical region c
has sub-classes
estuary c, lake c, ocean c, sea c

boreoeutheriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1437010

has super-classes
eutheria c
has sub-classes
euarchontoglires c

bridge ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000004

An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module.
has super-classes
ontology file ontology module c
has sub-classes
taxonomic bridge ontology module c

catarrhinic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9526

has super-classes
simiiformes c
has sub-classes
hominoidea c

cercozoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_136419

has super-classes
rhizaria c
has sub-classes
chlorarachniophyceae c

changec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25446

The act of alteration or modification; changed or altered in form or character.
is equivalent to
process c and (affects op some continuant c or conceptual entity c)
has super-classes
process c
has sub-classes
change in environment c, change in individual c
is in range of
shows changes in species trait op

change in environmentc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000020

Any change in the environment, e.g. concerning temperature, soil nutrients or biodiversity
is equivalent to
change c and (affects op some environmental system c)
has super-classes
change c
is disjoint with
change in individual c

change in individualc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000047

Any change in an individual organism, e.g. concerning its size or life cycle stage
is equivalent to
change c and (affects op some organism c)
has super-classes
change c
has sub-classes
behavioural change c, genetic change c, morphological change c, phenological change c, physiological change c
is disjoint with
change in environment c

chlorarachniophyceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_29197

has super-classes
algae c, cercozoa c

chlorophytac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_3041

has super-classes
algae c, viridiplantae c

chondrichthyesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7777

has super-classes
gnathostomata <vertebrate> c, pisces c

chordatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7711

has super-classes
deuterostomia c
has sub-classes
craniata <chordata> c

clayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00002982

A group of hydrous aluminium phyllosilicate (phyllosilicates being a subgroup of silicate minerals) minerals (see clay minerals), that are typically less than 2 micrometres in diameter. Clay consists of a variety of phyllosilicate minerals rich in silicon and aluminium oxides and hydroxides which include variable amounts of structural water.
is equivalent to
environmental material c and (has quality op some porous c)
has super-classes
environmental material c
is disjoint with
water c, permafrost c, silt c, sand c, particulate matter c, organic material c, snow c, gaseous environmental material c, liquid environmental material c, metallic material c, ice c

coastc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000687

Used for both marine and lake coasts. The boundary of the coast is fuzzy and it overlaps both the water body and land in quesiton. Compared to 'shore'
A coast is the area where land meets the sea, ocean, or lake.
is equivalent to
environmental zone c and ((overlaps op some land c) and (overlaps op some ocean c or sea c or lake c))
has super-classes
environmental zone c
is disjoint with
atmospheric zone c

coelurosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_436492

has super-classes
theropoda c
has sub-classes
aves c

cold environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000309

The definition of the deprecated 'cold temperature habitat' class, which this class was derived from, quotes an upper threshold of 15 degrees Celsius for 'coldness'.
An environment which has a lower temperature than some local or global average.
has super-classes
environmental system c

collection of organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000000

A material entity that consists of two or more organisms, viruses, or viroids.
is equivalent to
material entity c and (has part op min 2 )
has super-classes
material entity c
has sub-classes
community c, multi-species collection of organisms c, single-species collection of organisms c
is disjoint with
geographic feature c, geographical entity c, organism c, resource c

colorc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C37927

The appearance of objects (or light sources) described in terms of a person's perception of their hue and lightness (or brightness) and saturation.
has super-classes
morphological feature c
is disjoint with
length c, width c, height c, anatomical structure c

communityc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000046

definition from: http://purl.obolibrary.org/obo/PCO_000000
A community of at least two different species, living in a particular area. Must have at least two populations of different species as members.
is equivalent to
collection of organisms c and (has part op min 2 species c) and (located in op exactly 1 area c)
has super-classes
collection of organisms c
is disjoint with
single-species collection of organisms c

community dynamicsc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#ComunityDynamics

The community dynamics is the study of changes over time of the structure of biological communities.
is equivalent to
process c and (affects op some population c) and (occurs in op some ecosystem c)
has super-classes
process c
is disjoint with
environmental system process c, human activity c, invasion c, allocation c

competitive strengthc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000089

A species is strongly competitive, if its way of using shared resources usually leads to a reduction in survivorship, growth and/or reproduction of at least some of the competing individuals of the other species.
has super-classes
strength c

compositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000025

A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts.
has super-classes
structure c
has sub-classes
composition of soil c, composition of water c, granular c
is disjoint with
permeability c, laminar c

composition of soilc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_09200008

The composition of some soil.
is equivalent to
structure of soil c and composition c
has super-classes
composition c, structure of soil c
is disjoint with
porosity of soil c

composition of waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_09200017

The composition of some water.
has super-classes
composition c

compound propertyc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000083

Attribute resulting from a combination of several traits
has super-classes
trait c
has sub-classes
defense c, strength c

conceptual entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C20181

An organizational header for concepts representing mostly abstract entities.
has super-classes
thing c
has sub-classes
area c, benefit c, estimate c, event c, impact c, invasion phase c, invasion success c, origin c, phenotype c, place c, propagule pressure c, range c, site c, status c, system c, taxon c, trait c, zone c

condensation processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000724

Condensation is a process during which a gas undergoes a phase transition into a liquid.
is equivalent to
material congelation process c and (has input op some gaseous environmental material c) and (has output op some liquid environmental material c)
has super-classes
material congelation process c
has sub-classes
hydrological condensation process c

contiguous island land massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000357

It cannot be a part of the island, for example, that is below water.
A subcontinental land mass that is part of an island and includes part of the land surface of the island.
has super-classes
subcontinental land mass c

contiguous land massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000335

per the definition of 'contiguous' of "being in actual contact : touching along a boundary or at a point", these land masses share boundaries with other land masses that are part of the same continent, and thus are not surrounded by water like an island. At some point, we need an 'adjacent to' relation if BFO doesn't provide it. One question is whether this class encompasses fiat parts of islands.
has super-classes
subcontinental land mass c

continentc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000060

from http://vivoweb.org/ontology/core#Continent
A large contiguous landmass that is at least partially surrounded by water, together with any islands on its continental shelf.
has super-classes
land c
is disjoint with
island c

continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000002

A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
Is defined by
http://purl.obolibrary.org/obo/bfo.owl
has sub-classes
generically dependent continuant c, independent continuant c, specifically dependent continuant c
is in domain of
output of op, participates in op
is in range of
has output op, has participant op

craniata <chordata>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_89593

has super-classes
chordata c
has sub-classes
vertebrata <metazoa> c

crocodyliac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1294634

has super-classes
archosauria c, reptilia c

crustaceac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6657

has super-classes
pancrustacea c

cryospherec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000818

This is a very broad and, in practice, poorly defined term. Please consider using or requesting a more specific class.
A cryosphere is that part of a planet which is primarily composed of water is in solid form.
has super-classes
glacial feature c

cryptophyceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_3027

has super-classes
algae c, eukaryota c
is disjoint with
haptista c, discoba c, sar c, rhodophyta c, viridiplantae c, opisthokonta c, glaucocystophyceae c

curation status specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000078

The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
Source
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
OBI_0000266
Term status
http://purl.obolibrary.org/obo/IAO_0000125
has super-classes
data about an ontology part c

curation subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000007

A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation.
has super-classes
ontology slim subset ontology module c

cyclec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25472

An event or sequence of events that constitute a round or succession of observable phenomena, recurring usually at regular or approximately regular time intervals and in the same sequence.
has super-classes
event c

cyclostomatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1476529

has super-classes
pisces c
has sub-classes
hyperoartia c, myxini c

data about an ontology partc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000102

data about an ontology part is a data item about a part of an ontology, for example a term
has super-classes
data item c
has sub-classes
curation status specification c, db xref c, definition c, denotator type c, obsolescence reason specification c, ontology file ontology module c, subset c, synonym c, synonym type c

data itemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000027

a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
has super-classes
information content entity c
has sub-classes
data about an ontology part c, measurement datum c

datum labelc back to ToC or Class ToC

data item labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000009

An information content entity that is part of some data item and is used to partially define the denotation of that data item.
Term status
http://purl.obolibrary.org/obo/IAO_0000122
has super-classes
information content entity c
has sub-classes
measurement unit label c

db xrefc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#DbXref

has super-classes
data about an ontology part c

death ratec back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#Mortality

It's the number of individuals dead over time.
is equivalent to
life history trait c and (is mortality of op some population c)
has super-classes
life history trait c
is in domain of
is mortality of op
is in range of
has mortality op
is disjoint with
recruitment c, longevity c, generation length c, birth rate c

defensec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C61556

A trait or behaviour that is useful for repelling an enemy.
has super-classes
compound property c
is in domain of
has decreased effort level by op, has increased effort level by op, is against op, is enhanced by op
is in range of
decreases effort in op, enhance op, increases effort in op

definitionc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#Definition

has super-classes
data about an ontology part c

denotator typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000409

A denotator type indicates how a term should be interpreted from an ontological perspective.
Source
Barry Smith, Werner Ceusters
Example
The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities.
is equivalent to
{ i a o 0000410 , i a o 0000420 , i a o 0000421 }
has super-classes
data about an ontology part c

deuterostomiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33511

has super-classes
bilateria c
has sub-classes
chordata c
is disjoint with
protostomia c

differencec back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#Difference

It's the difference of any parameter (size, number of deads, number of recruits etc.) between two dates.
has super-classes
estimate c

dinophyceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2864

has super-classes
algae c, alveolata c

dinosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_436486

has super-classes
archosauria c
has sub-classes
saurischia c

dipnomorphac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7878

has super-classes
dipnotetrapodomorpha c, pisces c
is disjoint with
tetrapoda c

dipnotetrapodomorphac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1338369

has super-classes
sarcopterygii c
has sub-classes
dipnomorpha c, tetrapoda c

discobac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2611352

has super-classes
eukaryota c
has sub-classes
euglenozoa c
is disjoint with
haptista c, sar c, rhodophyta c, cryptophyceae c, viridiplantae c, opisthokonta c, glaucocystophyceae c

displacedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002181

A positional quality inhering in a bearer by virtue the bearer's being changed in position.
has super-classes
position c

disturbancec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000001

A disturbance is an event or process that disrupts ecosystem, community or population structure, and changes resources, substrate availability or the physical environment. Disturbances can have anthropogenic or non-anthropogenic causes.
is equivalent to
ecosystem process c and (affects op some community c or resource c or population c)
has super-classes
ecosystem process c
has sub-classes
anthropogenic disturbance c, natural disturbance c

disturbed ecosystemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000445

This is often used by plant collectors when early successional species are observed in an area.
An ecosystem which has been subject to a perturbation, that is, the ecosystem has undergone a pronounced change in response to a change in environmental conditions or other perturbation.
is equivalent to
ecosystem c and (is affected by op some disturbance c)
has super-classes
ecosystem c
is disjoint with
undisturbed ecosystem c

diversityc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000043

From http://www.fao.org/aims/aos/cwr.owl#Diversity
1) The variety of plant and animal taxa, including genes, amino acids, flowers, species, or populations. 2) The variety of plant and animal communities, forest types, stand conditions, age classes, and landscape components.
has super-classes
ecosystem property c
has sub-classes
biodiversity c
is disjoint with
resistance c

diversity indexc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#DiversityIndex

It's a quantitative measure that reflects how many different types (such as species) there are in a dataset, and can simultaneously takes into account how evenly the basic units (such as individuals) are distributed among those types. Source: wikipedia.org
has super-classes
ecological measure c
has sub-classes
beta diversity index c, species diversity index c, species evenness index c, species richness index c
is in domain of
has value op
is in range of
has index op

ecdysozoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1206794

has super-classes
protostomia c
has sub-classes
panarthropoda c

ecological impactc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000088

A measurable change to the properties of an ecosystem by a non-native species.
has super-classes
impact c, invasion success c
is disjoint with
establishment c, population survival c

ecological measurec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000044

metric for qualifying ecologically relevant characteristics, e.g. biodiversity or body length
has super-classes
estimate c
has sub-classes
diversity index c

ecoregionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000276

Unlike biomes, ecoregions are geographically defined entities. ENVO's sister project, GAZ, contains terms for instances of ecoregions (e.g. Beringia lowland tundra). Requests for new terms should be directed to GAZ. ENVO will only contain this top-level class. The class' definition is preliminary and will be aligned to BFO.
A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.
has super-classes
environmental zone c
has sub-classes
terrestrial ecoregion c
is disjoint with
atmospheric zone c

ecosystemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001110

This class will be primarily filled by inference, any environmental system which necessarily includes living parts should be autoclassified here.
An environmental system which includes both living and non-living components.
has super-classes
environmental system c
has sub-classes
disturbed ecosystem c, environment associated with a plant part or small plant c, environment associated with an animal part or small animal c, environmental system determined by an organism c, undisturbed ecosystem c, wetland ecosystem c
is in domain of
has increased levels of op
is disjoint with
habitat c

ecosystem processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001795

An environmental process either driven by or primarily impacting the parts or emergent properties of an ecosystem.
is equivalent to
environmental system process c and biological process c and (affects op some ecosystem property c)
has super-classes
biological process c, environmental system process c
has sub-classes
disturbance c
is disjoint with
reproduction c, growth c, host organism interaction c

ecosystem propertyc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000019

from http://www.openness-project.eu/taxonomy/term/73
Attributes which characterize an ecosystem, such as its size, biodiversity, stability, degree of organization, as well as its functions and processes (i.e. the internal exchanges of materials, energy and information among different pools).
is equivalent to
trait c and (characteristic for op some ecosystem c)
has super-classes
trait c
has sub-classes
diversity c, resistance c
is disjoint with
organism characteristic c, population group characteristic c, morphological feature c, genetic characteristic c, functional trait c, species trait c, life history trait c

ecozonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000280

ENVO contains this top-level class, but all instances will be in GAZ. The definition is preliminary and will be aligned to BFO. https://en.wikipedia.org/wiki/ Ecozones correspond to the floristic kingdoms of botany or zoogeographic regions of zoology. Ecozones are characterized by the evolutionary history of the organisms they contain. They are distinct from biomes, also known as major habitat types, which are divisions of the Earth's surface based on life form, or the adaptation of plants and animals to climatic, soil, and other conditions. Biomes are characterized by similar climax vegetation. Each ecozone may include a number of different biomes. A tropical moist broadleaf forest in Central America, for example, may be similar to one in New Guinea in its vegetation type and structure, climate, soils, etc., but these forests are inhabited by plants and animals with very different evolutionary histories.
Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration.
has super-classes
environmental zone c
is disjoint with
atmospheric zone c

ectoparasitec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000070

from http://www.projecthalo.com/aura#Ectoparasite
A parasite that lives on and feeds from the external surface of the host's body.
has super-classes
parasite c

el++ ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000020

has super-classes
ontology module subsetted by owl profile c

electromagnetic (em) radiation qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001291

A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.
has super-classes
radiation quality c
has sub-classes
optical quality c

elevationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001687

A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface.
has super-classes
position c

elongatedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001154

A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width.
has super-classes
shape c

embryophytac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_3193

has super-classes
streptophytina c
has sub-classes
tracheophyta c

endolithic environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000303

An endolithic environment is an environment that exists within solid rock.
is equivalent to
environmental system c and (surrounded by op some rock c)
has super-classes
environmental system c
is disjoint with
marine environment c

endurancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C89276

The ability to sustain an activity over a period of time.
has super-classes
functional trait c
is disjoint with
length c, width c, height c, perimeter c, mass c

enemyc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000091

An organism that is a predator, consumer, parasite, parasitoid or pathogen of another organism.
is equivalent to
role c and (is enemy of op some species c)
has super-classes
role c
has sub-classes
generalist c, parasite c, predator c, specialist c
is in range of
is against op

energyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C48058

The capacity of a physical system to do work.
has super-classes
resource c
is disjoint with
nutrient c

enriched soilc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00003082

This could be demoted to an inferred class if issues with double inheritance arise.
A portion of enriched soil is a portion of soil with elevated levels of some material entity.
is equivalent to
soil c and (has increased levels of op some material entity c)
has super-classes
soil c

environment associated with a plant part or small plantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001057

An environmental system determined by part of a living or dead plant, or a whole small plant.
has super-classes
ecosystem c
is disjoint with
wetland ecosystem c

environment associated with an animal part or small animalc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001055

An environmental system determined by part of a living or dead animal, or a whole small animal.
has super-classes
ecosystem c
is disjoint with
wetland ecosystem c

environment associated with an aquatic invertebratec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001176

An environment which has its properties and composition largely determined by the presence of a metazoan which lacks a vetebral column and which has a habitat that is found in an aquatic environmental system.
has super-classes
animal-associated environment c

environmental conditionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000203

An abiotic environmental factor that influences the functioning of living organisms (Begon et al., 2006).
An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system.
Term status
http://purl.obolibrary.org/obo/IAO_0000121
is equivalent to
trait c and (characteristic for op some environmental system c)
has super-classes
trait c
has sub-classes
average annual precipitation c, fire incidence c, humidity c, mean annual temperature c, nutrient content c, pH c
is disjoint with
organism characteristic c, population group characteristic c, morphological feature c, genetic characteristic c, functional trait c, species trait c, life history trait c

environmental featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00002297

A material entity determines an environmental system when its removal would cause the collapse of that system. For example, a seamount determines a seamount environment, acting as its 'hub'. This class is currently being aligned to the Basic Formal Ontology. Following this alignment, its definition and the definitions of its subclasses will be revised.
A material entity which determines an environmental system.
is equivalent to
material entity c and (determines op some environmental system c)
has super-classes
material entity c
has sub-classes
glacial feature c

environmental materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00010483

Everything under this parent must be a mass noun. All subclasses are to be understood as being composed primarily of the named entity, rather than restricted to that entity. For example, "ENVO:water" is to be understood as "environmental material composed primarly of some CHEBI:water". This class is currently being aligned to the Basic Formal Ontology. Following this alignment, its definition and the definitions of its subclasses will be revised.
A portion of environmental material is a fiat object part which forms the medium or part of the medium of an environmental system.
has super-classes
resource c
has sub-classes
clay c, gaseous environmental material c, ice c, liquid environmental material c, metallic material c, organic material c, particulate matter c, permafrost c, sand c, sediment c, silt c, snow c, soil c, solid environmental material c, water c

environmental systemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000254

In ENVO's alignment with the Basic Formal Ontology, this class is being considered as a subclass of a proposed BFO class "system". The relation "environed_by" is also under development. Roughly, a system which includes a material entity (at least partially) within its site and causally influences that entity may be considered to environ it. Following the completion of this alignment, this class' definition and the definitions of its subclasses will be revised.
A system which has the disposition to environ one or more material entities.
has super-classes
system c
has sub-classes
anatomical entity environment c, anthropogenic environment c, aquatic environment c, biosphere c, cold environment c, ecosystem c, endolithic environment c, environmental system determined by a material c, environmental system determined by a quality c, habitat c, marine environment c, natural environment c, saline environment c, sediment environment c, soil environment c

environmental system determined by a materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000998

Organisational class. Not intended for annotation. Subclasses describe environments which are usually permeated by an environmental material. They may also describe environments which are sufficiently close to a material, that their dynamics are strongly influenced by it (e.g. a patch of forest ecosystem neighbouring a uranium dump).
An environmental system within which an environmental material strongly influences the system's composition and properties.
Is deprecated
true
has super-classes
environmental system c
has sub-classes
aquatic environment c, saline environment c, sediment environment c, soil environment c

environmental system determined by a qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000997

Organisational class. Not intended for annotation.
An environmental system which is determined by materials bearing roughly homogeneous qualities.
Is deprecated
true
has super-classes
environmental system c
has sub-classes
aquatic environment c, high osmolarity environment c, soil environment c

environmental system determined by an organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001000

An environmental system which is determined by a living organism.
has super-classes
ecosystem c
has sub-classes
animal-associated environment c
is disjoint with
wetland ecosystem c

environmental system processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_02500000

This is a convenience class for organisation and should not be used for annotation.
A process in which includes the components of an environmental system as participants.
is equivalent to
process c and (has participant op some environmental feature c or environmental material c or environmental system c)
has sub-classes
anthropogenic environmental process c, atmospheric process c, ecosystem process c, hydrological process c, material accumulation process c, material transformation process c, material transport process c, radiation c
is disjoint with
community dynamics c, human activity c, invasion c, allocation c

environmental zonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000408

Formerly, this class was an experimental class and a subclass of "environmental feature". It is now aligned to BFO. The class was not obsoleted as the core semantics maintained their stability through its transition.
A site which has its extent determined by the presence or influence of one or more components of an environmental system or the processes occurring therein.
is equivalent to
zone c and (part of op some environmental system c)
has super-classes
zone c
has sub-classes
atmospheric zone c, coast c, ecoregion c, ecozone c, marine environmental zone c, terrestrial environmental zone c

erosionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001346

An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited.
is equivalent to
material transport process c and (has participant op some environmental material c)

establishmentc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000003

has super-classes
invasion success c
is disjoint with
ecological impact c

estimatec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000042

has super-classes
conceptual entity c
has sub-classes
difference c, ecological measure c, increment c, quantity c
is disjoint with
site c, impact c, phenotype c, place c, benefit c, event c, status c, taxon c, origin c, zone c, system c, propagule pressure c, area c, invasion phase c, range c, trait c, invasion success c

estuaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000045

A semi-enclosed coastal body of water with one or more rivers or streams flowing into it, and with a free connection to the open sea.
is equivalent to
body of water c and (adjacent to op some ocean c)
has super-classes
body of water c
has sub-classes
inverse estuary c
is disjoint with
ocean c, sea c, lake c

euarchontogliresc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314146

has super-classes
boreoeutheria c
has sub-classes
primates c

euglenidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_3035

has super-classes
algae c, euglenozoa c

euglenozoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33682

has super-classes
discoba c
has sub-classes
euglenida c

eukaryotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2759

has super-classes
taxon c
has sub-classes
cryptophyceae c, discoba c, glaucocystophyceae c, haptista c, opisthokonta c, rhodophyta c, sar c, viridiplantae c
is disjoint with
viruses c, bacteria c, archaea c

euteleostomic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_117571

has super-classes
teleostomi c
has sub-classes
actinopterygii c, sarcopterygii c

eutheriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9347

has super-classes
theria <mammalia> c
has sub-classes
boreoeutheria c

eventc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25499

Something that happens at a given place and time.
has super-classes
conceptual entity c
has sub-classes
cycle c
is disjoint with
site c, impact c, phenotype c, place c, benefit c, status c, taxon c, origin c, zone c, system c, propagule pressure c, area c, invasion phase c, estimate c, range c, trait c, invasion success c

external importc back to ToC or Class ToC

external import ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000011

An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach.
has super-classes
import file import ontology module c

fire incidencec back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#FireIncidence

The occurrence of burning in ecosystems.
has super-classes
environmental condition c
is disjoint with
average annual precipitation c, mean annual temperature c, pH c, humidity c, nutrient content c

frozen soilc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001526

Soil which is below the freezing point of water.
is equivalent to
soil c and ice c
has super-classes
ice c, soil c

functional traitc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000038

after Reiss, J., Bridle, J.R., Montoya, J.M. and Woodward, G. 2009. Emerging horizons in biodiversity and ecosystem functioning research. Trends Ecol. Evol., 24: 505-514, and McGill BJ, Enquist BJ, Weiher E, Westoby M (2006) Rebuilding community ecology from functional traits Trends Ecol Evol 21:178-185
A trait that strongly influences organismal performance, and that determines its effect on processes and its response to environmental factors
has super-classes
trait c
has sub-classes
endurance c, height c, length c, mass c, perimeter c, width c
is disjoint with
environmental condition c, population group characteristic c, genetic characteristic c, ecosystem property c

fungic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_4751

has super-classes
opisthokonta c
is disjoint with
bilateria c

gaseous environmental materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000797

A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.
has super-classes
environmental material c
has sub-classes
air c, water vapour c
is disjoint with
permafrost c, soil c, sediment c, clay c, silt c, sand c, particulate matter c, organic material c, snow c, solid environmental material c, liquid environmental material c, ice c

generalistc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000022

A species that can survive and reproduce in a wide range of environmental conditions using a wide variety of resouces to do so.
has super-classes
enemy c
is disjoint with
specialist c

generated ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000014

An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV.
has super-classes
ontology file ontology module c
has sub-classes
template generated ontology module c

generation lengthc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000017

has super-classes
life history trait c
is disjoint with
growth c, death rate c, recruitment c, longevity c, birth rate c

generically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000031

A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
Is defined by
http://purl.obolibrary.org/obo/bfo.owl
has super-classes
continuant c
has sub-classes
information content entity c
is disjoint with
independent continuant c, specifically dependent continuant c, independent continuant c, specifically dependent continuant c

genetic changec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000013

Any change in the genome of a species
is equivalent to
change in individual c and (affects op some genetic characteristic c)
has super-classes
change in individual c
is disjoint with
behavioural change c

genetic characteristicc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000007

Information about the genetic characteristics
has super-classes
trait c
is disjoint with
environmental condition c, morphological feature c, ecosystem property c, functional trait c, life history trait c

genetic diversityc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000094

from https://en.wikipedia.org/wiki/Genetic_diversity
Genetic diversity is the total number of genetic characteristics in the genetic makeup of a species, it ranges widely from the number of species to differences within species and can be attributed to the span of survival for a species. It is distinguished from genetic variability, which describes the tendency of genetic characteristics to vary.
has super-classes
biodiversity c
is disjoint with
animal diversity c, beta diversity c

geodetic coordinate measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000787

A measurement of location on the Earth that uses a single number to specify a coordinate in a coordinate system known as a geodetic datum.
latitude and longitude are key subtypes
has super-classes
measurement datum c
has sub-classes
latitude latitude coordinate measurement datum c, longitude longitude coordinate measurement datum c

geodetic datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000788

A coordinate system, and a set of reference points, used to locate places on the Earth (or similar objects).
Every latitude and longitude measurement is with respect to a geodetic datum. Most common ones in use are NAD83 and WGS84.
Source
Wikipedia: https://en.wikipedia.org/wiki/Geodetic_datum Date accessed: 2015-04-13
has super-classes
information content entity c

Geographic Areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C16632

Any demarcated area of the Earth; may be determined by both natural and human boundaries.
has super-classes
geographical entity c
has sub-classes
rural area c, section c, urbanized area c

geographic featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000000

May appear on a map.
has super-classes
material entity c
has sub-classes
anthropogenic geographic feature c, hydrographic feature c, layer c
is disjoint with
collection of organisms c, organism c, resource c

geographical distributionc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#GeographicalDistribution

A geographical region that can include land as well as water.
has super-classes
range c

geographical entityc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000034

from https://encyclopedia2.thefreedictionary.com/geographic+entity
An entity or geographic feature that occupies a position in space about which data describing the attributes of the entity and its geographic location are recorded.
has super-classes
material entity c
has sub-classes
Geographic Area c, region c
is disjoint with
collection of organisms c, organism c

geographical regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000372

A geographical entity that is demarcated at least in part by one or more closed fiat boundaries all of whose lines are part of the planetary surface.
has super-classes
region c
has sub-classes
body of water c, land mass c

glacial featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000131

Likely to be depopulated and "glacial" made into a quality or similar.
A hydrographic feature characterized by the dominance of snow or ice.
has super-classes
environmental feature c
has sub-classes
cryosphere c

glaucocystophyceaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_38254

has super-classes
algae c, eukaryota c
is disjoint with
haptista c, discoba c, sar c, rhodophyta c, cryptophyceae c, viridiplantae c, opisthokonta c

gnathostomata <vertebrate>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7776

has super-classes
vertebrata <metazoa> c
has sub-classes
chondrichthyes c, teleostomi c

granularc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001759

A composition quality inhering in a bearer by virtue of the bearer's containing granules.
has super-classes
composition c

growthc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#GrowthRate

It's a measure of the changes in population or community size over time.
has super-classes
life history trait c
is in domain of
is growth of op
is in range of
has growth op
is disjoint with
longevity c, generation length c

growthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0040007

See also the biological process term 'cell growth ; GO:0016049'.
The increase in size or mass of an entire organism, a part of an organism or a cell.
is equivalent to
biological process c and (increases op some size c or mass c)
has super-classes
biological process c
is in domain of
is enhanced by op
is in range of
enhance op
is disjoint with
ecosystem process c, reproduction c, host organism interaction c

habitatc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000739

A habitat's specificity to an ecological population differentiates it from other environment classes.
An environmental system which can sustain and allow the growth of an ecological population.
has super-classes
environmental system c
is in domain of
is habitat of op
is in range of
has habitat op
is disjoint with
ecosystem c

haplorrhinic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_376913

has super-classes
primates c
has sub-classes
simiiformes c

haptistac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2608109

has super-classes
eukaryota c
has sub-classes
haptophyta c
is disjoint with
discoba c, sar c, rhodophyta c, cryptophyceae c, viridiplantae c, opisthokonta c, glaucocystophyceae c

haptophytac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2830

has super-classes
algae c, haptista c

heightc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25347

The vertical measurement or distance from the base to the top of an object; the vertical dimension of extension.
has super-classes
functional trait c, morphological feature c
is disjoint with
width c, color c, perimeter c, endurance c, mass c

hexapodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6960

has super-classes
pancrustacea c
has sub-classes
insecta c

high osmolarity environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000314

A high osmolarity environment is an environment in which entities are exposed to high concentrations of solutes.
Is deprecated
true
has super-classes
environmental system determined by a quality c
has sub-classes
saline environment c

hominidaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9604

has super-classes
hominoidea c
has sub-classes
homininae c

homininaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_207598

has super-classes
hominidae c
has sub-classes
homo c

hominoideac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314295

has super-classes
catarrhini c
has sub-classes
hominidae c

homoc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9605

has super-classes
homininae c
has sub-classes
homo sapiens c

homo sapiensc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9606

has super-classes
homo c

host organism interactionc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000006

See http://purl.bioontology.org/ontology/CSP/1035-7240
interactions between one organism and another which it harbors or nourishes.
has super-classes
biological process c
has sub-classes
symbiosis c
is disjoint with
ecosystem process c, reproduction c, growth c

housing humidityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C90395

The amount of water vapor in the air of a living space.
has super-classes
humidity c

human activityc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000040

Actions of human beings that have an influence on the environment and that are characteristic for human societies, i.e. they are linked to social, economic or other cultural processes.
is equivalent to
process c and (has participant op some homo sapiens c)
has super-classes
process c
has sub-classes
anthropogenic disturbance c
is disjoint with
community dynamics c, environmental system process c, invasion c, allocation c

humidityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C88206

A measure of the water vapor content of air.
has super-classes
environmental condition c
has sub-classes
housing humidity c, mean annual relative humidity c
is disjoint with
fire incidence c, average annual precipitation c, mean annual temperature c, nutrient content c

hydrographic featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000012

A geographical feature associated with water.
is equivalent to
geographic feature c and (adjacent to op some body of water c)
has super-classes
geographic feature c
has sub-classes
marine pelagic feature c, saline hydrographic feature c, shore c

hydrological condensation processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000624

"process" is included in the label to make it clear that we are not referring to the condensed material (e.g. water droplets, window fog)
Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
is equivalent to
condensation process c and hydrological process c and (has input op some atmospheric water vapour c) and (has output op some liquid water c)
has super-classes
condensation process c, hydrological process c
is disjoint with
water flow process c

hydrological precipitation processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000703

"process" is included in the label to make it clear that we are not referring to the precipitated material (e.g. snow, rain, sleet)
Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity.
is equivalent to
precipitation process c and (has input op some (environmental material c) and (output of op some hydrological condensation process c))

hydrological processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_02500031

This classes asserted subclasses will be moved away as it should be an inferred class.
An environmental process which has water - in any of its states - as a participant.
is equivalent to
environmental system process c and (has participant op some water c or liquid water c or water vapour c or water ice c)
has super-classes
environmental system process c
has sub-classes
hydrological condensation process c, water flow process c

hyperoartiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_117569

has super-classes
cyclostomata c

icec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001125

This class is defined logically - any material that is frozen is considered a subclass. Note that ice may be formed at very high temperatures, due to gravitational effects and/or pressure.
An ice is an environmental material which is either frozen or which is maintained in a solid state by gravitational forces or pressure.
has super-classes
environmental material c
has sub-classes
frozen soil c
is disjoint with
clay c, silt c, sand c, particulate matter c, organic material c, gaseous environmental material c, liquid environmental material c, metallic material c

impactc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C122929

The effect or consequence of an event or condition.
has super-classes
conceptual entity c
has sub-classes
ecological impact c
is disjoint with
site c, phenotype c, place c, benefit c, event c, status c, taxon c, origin c, zone c, system c, propagule pressure c, area c, invasion phase c, estimate c, range c, trait c

import filec back to ToC or Class ToC

import ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000005

A subset ontology module that is intended to be imported from another ontology.
has super-classes
ontology slim subset ontology module c
has sub-classes
external import external import ontology module c

in progressc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000078

has super-classes
status c
is disjoint with
successful c, presence c, absence c

incrementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C47882

The amount by which something increases.
has super-classes
estimate c

independent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000004

A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
Is defined by
http://purl.obolibrary.org/obo/bfo.owl
Example
a spatial region
an organism
has super-classes
continuant c
has sub-classes
material entity c
is in domain of
adjacent to op, contains op, has quality op, located in op, location of op, occupies spatial region at some time op, surrounded by op, surrounds op
is in range of
adjacent to op, contained in op, has spatial occupant at some time op, located in op, location of op, quality of op, role of op, surrounded by op, surrounds op
is disjoint with
specifically dependent continuant c, generically dependent continuant c, specifically dependent continuant c, generically dependent continuant c

information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

A generically dependent continuant that is about some thing.
has super-classes
generically dependent continuant c
has sub-classes
data item c, datum label data item label c, geodetic datum c, value specification c

insectac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_50557

has super-classes
hexapoda c

invasionc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000064

The process of transportation, establishment and spread of organisms outside of their native range.
is equivalent to
process c and (occurs in op some ecosystem c) and (has participant op some alien species c)
has super-classes
process c
is disjoint with
community dynamics c, environmental system process c, human activity c, allocation c

invasion establishment phasec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000069

phase of establishment in the alien range as part of the invasion process
has super-classes
invasion phase c
is disjoint with
invasion spread phase c, invasion transport phase c

invasion phasec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000027

Sequential phases during the invasion process. Typically, four different phases are distinguished: transport, introduction, establishment and spread.
has super-classes
conceptual entity c
has sub-classes
invasion establishment phase c, invasion spread phase c, invasion transport phase c
is in range of
completed invasion phase op, is in invasion phase op
is disjoint with
site c, impact c, phenotype c, place c, benefit c, event c, status c, taxon c, origin c, zone c, system c, propagule pressure c, area c, estimate c, range c, trait c, invasion success c

invasion spread phasec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000024

phase of spreading in the alien range as part of the invasion process
has super-classes
invasion phase c
is disjoint with
invasion transport phase c, invasion establishment phase c

invasion successc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000068

Completing one or all phases of the invasion process.
is equivalent to
completed invasion phase op some invasion spread phase c or invasion transport phase c or invasion establishment phase c
has super-classes
conceptual entity c
has sub-classes
ecological impact c, establishment c, population survival c
is in range of
achieves op
is disjoint with
site c, phenotype c, place c, benefit c, event c, taxon c, origin c, zone c, system c, propagule pressure c, area c, invasion phase c, estimate c, range c, trait c

invasion transport phasec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000032

phase of transportation to the alien range as part of the invasion process
has super-classes
invasion phase c
is disjoint with
invasion spread phase c, invasion establishment phase c

invasive speciesc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000005

Alien species that become established and spread beyond the place of introduction are called invasive species.
Alien species that sustain self-replacing populations over several life cycles, produce reproductive offspring, often in very large numbers at considerable distance from the parent and/or site of introduction, and have the potential to spread over long distances.
is equivalent to
alien species c and (completed invasion phase op some invasion spread phase c) and (completed invasion phase op some invasion establishment phase c)
has super-classes
alien species c
is in domain of
facilitate op
is disjoint with
non-invasive species c

inverse estuaryc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000228

An estuary which is located in regions where evaporation greatly exceeds the inflow of fresh water, forming a zone of maximum salinity towards which both riverine and marine water masses flow, before sinking and spreading along the bottom in both seaward and landward directions.
has super-classes
estuary c

involvementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25548

To have a connection by participation or association or use; sharing in an activity or process.
has super-classes
process c
is disjoint with
allocation c

islandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C48952

A land mass smaller than a continent that is surrounded by water.
has super-classes
land c
is disjoint with
continent c

lakec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000020

A body of water or other liquid of considerable size contained in a depression on a landmass.
has super-classes
body of water c
has sub-classes
natural lake c, saline lake c
is disjoint with
ocean c, sea c, estuary c

laminarc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002124

A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer.
has super-classes
structure c
is disjoint with
composition c

landc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001785

A surface layer of an astronomical body which is primarily composed of solid material and is not covered by oceans or other bodies of water.
is equivalent to
solid surface layer c and geographical region c
has sub-classes
continent c, island c, shore c, subcontinent c

land massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000375

has super-classes
geographical region c
has sub-classes
aggregate of contiguous land masses c, subcontinental land mass c

latitudec back to ToC or Class ToC

latitude coordinate measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001620

A measurement datum that is the measure of the latitude coordinate of a site.
Source
NIAID GSCID-BRC metadata working group
Term status
http://purl.obolibrary.org/obo/IAO_0000120
has super-classes
geodetic coordinate measurement datum c

layerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000281

Preliminary definition.
A layer is a quantity of some material which is spatially continuous, has comparable thickness, and usually covers some surface.
has super-classes
geographic feature c
has sub-classes
atmosphere c, solid layer c, surface layer c

lengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25334

The linear extent in space from one end of something to the other end, or the extent of something from beginning to end.
has super-classes
functional trait c, morphological feature c
is disjoint with
color c, perimeter c, endurance c, mass c

lepidosauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8504

has super-classes
reptilia c, sauria c

life history traitc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000074

has super-classes
trait c
has sub-classes
birth rate c, death rate c, generation length c, growth c, longevity c, recruitment c
is disjoint with
environmental condition c, genetic characteristic c, ecosystem property c

lightc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000016

See http://purl.bioontology.org/ontology/MESH/D008027
That portion of the electromagnetic spectrum in the visible, ultraviolet, and infrared range.
has super-classes
resource c
is disjoint with
nutrient c

liquid air-water interface layerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001309

A liquid surface layer which is in contact with air.
is equivalent to
liquid layer c and (adjacent to op some air c)
has super-classes
liquid layer c

liquid environmental materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000815

This is a defined class: its subclasses will not be asserted, but filled by inference.
An environmental material which is in a liquid state.
has super-classes
environmental material c
has sub-classes
liquid water c
is disjoint with
permafrost c, soil c, sediment c, clay c, silt c, sand c, particulate matter c, snow c, gaseous environmental material c, solid environmental material c, ice c

liquid layerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001273

A layer which is primarily composed of some liquid material.
has super-classes
surface layer c
has sub-classes
aquatic layer c, liquid air-water interface layer c
is disjoint with
solid surface layer c

liquid waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00002006

An environmental material primarily composed of dihydrogen oxide in its liquid form.
is equivalent to
water c and liquid environmental material c
has super-classes
liquid environmental material c, water c

longevityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C153298

The length or duration of life or viability.
has super-classes
life history trait c
is disjoint with
growth c, death rate c, recruitment c, generation length c, birth rate c

longitudec back to ToC or Class ToC

longitude coordinate measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001621

A measurement datum that is the measure of the longitude coordinate of a site.
Source
NIAID GSCID-BRC metadata working group
Term status
http://purl.obolibrary.org/obo/IAO_0000120
has super-classes
geodetic coordinate measurement datum c

lophotrochozoac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_1206795

has super-classes
spiralia c
has sub-classes
mollusca c

main release ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000003

An ontology module that is intended to be the primary release product and the one consumed by the majority of tools.
has super-classes
ontology file ontology module c

mammaliac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_40674

has super-classes
amniota c
has sub-classes
theria <mammalia> c
is disjoint with
sauropsida c

mandibulatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_197563

has super-classes
arthropoda c
has sub-classes
pancrustacea c

marine environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000320

A marine environment and enviroment which is determined by a marine water body.
has super-classes
environmental system c
is disjoint with
endolithic environment c

marine environmental zonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001201

This class will eventually be populated by inference alone, with its subclasses distributed in more process-linked hierarchies to improve semantic density.
An environmental zone which is bounded by material parts of a marine environment.
is equivalent to
environmental zone c and (part of op some marine environment c)
has super-classes
environmental zone c
is disjoint with
terrestrial environmental zone c, atmospheric zone c

marine layerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000295

A layer that is part of a marine water body.
is equivalent to
aquatic layer c and (part of op some ocean c or sea c)
has super-classes
aquatic layer c, marine pelagic feature c
has sub-classes
sea surface layer c

marine pelagic featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000044

A prominent or distinctive aspect, quality, or characteristic of environments occurring within the marine water column.
has super-classes
hydrographic feature c
has sub-classes
marine layer c
is disjoint with
shore c

marine sedimentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03000033

Particles of marine sediment are primarily generated by 1) processes in terrestrial systems and transported to the marine realm by the action of rivers or aeolian processes (amongst other routes) , 2) marine organisms, 3) chemical processes in seawater, or 4) cosmogeneous input.
Sediment which has been transported through the marine water column, settling on the seafloor.
is equivalent to
sediment c and (output of op some sedimentation in a water body c)
has super-classes
sediment c

massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000125

A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
has super-classes
functional trait c
is disjoint with
length c, width c, height c, perimeter c, endurance c

mass liquid flowc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000981

This class can refer to the flow of any material in a liquid phase.
A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
is equivalent to
advective transport process c and (has participant op some liquid environmental material c)
has super-classes
advective transport process c
has sub-classes
water flow process c

material accumulation processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03000009

Experimental class for structural purposes not recommended for annotation. A material accumulation process ends a material transport process.
A process during which the mass of one or more materials, present within a given site, increases.
has super-classes
environmental system process c
has sub-classes
sedimentation in a water body c

material congelation processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001510

Sometimes the increase in viscosity is great enough to crystallize or solidify the substance in question.
A material transformation process during which a material's viscosity increase either through a reduction in temperature or through chemical reactions.
has super-classes
material transformation process c
has sub-classes
condensation process c

material entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
Is defined by
http://purl.obolibrary.org/obo/bfo.owl
Example
a hurricane
a puff of smoke
a sea wave
a tornado
has super-classes
independent continuant c
has sub-classes
collection of organisms c, environmental feature c, geographic feature c, geographical entity c, organism c, resource c
is in domain of
capable of op, contained in op, derives from op, derives into op, determines op, has part structure that is capable of op, interacts with op, produced by op, produces op
is in range of
contains op, derives from op, derives into op, enabled by op, has input op, interacts with op, occurs in op, produced by op, produces op

material transformation processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03000043

Experimental class for structural purposes not recommended for annotation. A material transformation process only refers to ENVO:environmental material classes (e.g. bulk and typically impure substances), rather than transformations converting a specific chemical into another.
A process during which a portion of some environmental material is converted into a different material or a collection of materials.
is equivalent to
environmental system process c and (has input op some environmental material c) and (has output op some environmental material c)
has super-classes
environmental system process c
has sub-classes
material congelation process c

material transport processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03000010

Experimental class for structural purposes not recommended for annotation.
A process during which material is displaced from its original location and transported either to a new location or back to the original location.
is equivalent to
environmental system process c and (has output op some material entity c and (has quality op some displaced c))
has super-classes
environmental system process c
has sub-classes
advective transport process c, precipitation process c

mean annual relative humidityc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#RelativeHumidity

The relative amount of whater vapour in the atmosphere
has super-classes
humidity c

mean annual temperaturec back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#Temperature

It is a measure of the thermal energy per particle of matter or radiation; it is measured by a thermometer, which may be calibrated in any of various temperature scales, Celsius, Fahrenheit, Kelvin, etc (http://en.wikipedia.org/wiki/Temperature).
has super-classes
environmental condition c
is disjoint with
fire incidence c, average annual precipitation c, pH c, humidity c, nutrient content c

measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000109

A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.
Source
OBI_0000305
group:OBI
Term status
http://purl.obolibrary.org/obo/IAO_0000125
Example
Examples of measurement data are the recoding of the weight of a mouse as {40,mass,"grams"}, the recording of an observation of the behavior of the mouse {,process,"agitated"}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}.
has super-classes
data item c
has sub-classes
geodetic coordinate measurement datum c, scalar measurement datum c

measurement unit labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000003

A data item label that denotes a unit of measure.
Term status
http://purl.obolibrary.org/obo/IAO_0000122
Example
Examples of measurement unit labels are liters, inches, weight per volume.
has super-classes
datum label data item label c
has sub-classes
area unit c, plane angle measurement unit label c
is in range of
has measurement unit label op

metallic materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001069

While this class allows for some degree of contamination by non-metal substances, the material represented should show at least some of the typical features of a pure metal: hardness (except for liquid metals), opacity, lustre, malleability, fusibility, ductile and good electrical and thermal conductivity.
A material which is composed primarily of one or more pure metals and which shows their properties.
is equivalent to
environmental material c and (has quality op some opaque c)
has super-classes
environmental material c
is disjoint with
water c, permafrost c, soil c, clay c, sand c, particulate matter c, organic material c, snow c, ice c

micronutrientc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000002

See http://purl.bioontology.org/ontology/MESH/D018977
Essential dietary elements or organic compounds that are required in only small quantities for normal physiologic processes to occur.
has super-classes
nutrient c

mineral materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000256

A mineral material is an environmental material which is primarily composed of some substance that is naturally occurring, solid and stable at room temperature, representable by a chemical formula, usually abiogenic, and that has an ordered atomic structure.
has super-classes
solid environmental material c
is disjoint with
rock c, water ice c

mineral nutrientc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000009

Adapted from https://en.wikipedia.org/wiki/Mineral_%28nutrient%29
Chemical element required by organisms to perform functions necessary for life.
has super-classes
nutrient c

molluscac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_6447

has super-classes
lophotrochozoa c

morphological changec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000049

Any change in the morpholoy of a species
is equivalent to
change in individual c and (affects op some morphological feature c)
has super-classes
change in individual c

morphological featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/UBERON_0034768

A part of an organism or organ that is continuous with its surroundings and distinguished from its surroundings based on morphology.
has super-classes
trait c
has sub-classes
anatomical structure c, color c, height c, length c, width c
is disjoint with
environmental condition c, population group characteristic c, genetic characteristic c, ecosystem property c

morphological phenotypec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000062

The form and structure of an organism and its parts, including cells, that result from the interaction of its genotype and the environment. From Bio-Assay Ontology.
has super-classes
phenotype c

morphologyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000051

A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
has super-classes
physical object quality c
has sub-classes
amorphous c, shape c, size c, structure c

multi-species collection of organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000029

A collection of organisms that consists of two or more organisms from at least two species.
is equivalent to
collection of organisms c and (has part op min 2 species c)
has super-classes
collection of organisms c
is disjoint with
single-species collection of organisms c

myxinic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_117565

has super-classes
cyclostomata c

native rangec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000058

A range in which a species has evolved or in which it has arrived by natural means.
is equivalent to
range c and (is native range to op some species c)
has super-classes
range c
is disjoint with
alien range c

native speciesc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000051

Species that have evolved in a given area or that arrived there by natural means, without the intentional or accidental intervention of humans from an area where they are native.
has super-classes
species c
is disjoint with
alien species c

natural disturbancec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000036

disturbance that happened by some event not directly caused by human activity, e.g. storms or land slides
is equivalent to
disturbance c and (not (human activity c))
has super-classes
disturbance c
is disjoint with
anthropogenic disturbance c

natural environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000951

In most contexts, 'natural' is defined by the lack of intervention or influence by humans and their activities. On Earth, most environments fall on a scale between completely natural and anthropised.
An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.
has super-classes
environmental system c
has sub-classes
aquatic natural environment c, terrestrial natural environment c
is disjoint with
anthropogenic environment c

natural lakec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001022

A lake which has formed as the result of processes that are not or are only minimally driven by human activity.
has super-classes
lake c

neighborhoodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C64203

A surrounding or nearby region.
has super-classes
region c

non-invasive speciesc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000041

Alien species which are not in the subgroup of invasive species are part of the subgroup non-invasive species.
Alien species that is not an invasive species.
has super-classes
alien species c
is disjoint with
invasive species c

nutrientc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000012

See http://purl.bioontology.org/ontology/MESH/D000078622
Various components of food that are required for nourishment.
has super-classes
resource c
has sub-classes
animal nutrient c, micronutrient c, mineral nutrient c, nutrient salt c, plant nutrient c, primary nutrient c, secondary nutrient c, trace element c
is disjoint with
energy c, light c

nutrient contentc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000065

Amount of nutrients contained in something, e.g in a defined volume of soil or water
has super-classes
environmental condition c
is disjoint with
fire incidence c, average annual precipitation c, mean annual temperature c, humidity c

nutrient saltc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000015

Nutrient occurring in the chemical form of salt
has super-classes
nutrient c

obo basic subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000018

A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools. Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses). An ontology is OBO Basic if and only if it has the following characteristics: DAG Unidirectional No Dangling Clauses Fully Asserted Fully Labeled No equivalence axioms Singly labeled edges No qualifier lists No disjointness axioms No owl-axioms header No imports
has super-classes
ontology module subsetted by expressivity c

obsolescence reason specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000225

The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
Term status
http://purl.obolibrary.org/obo/IAO_0000125
is equivalent to
{ i a o 0000103 , i a o 0000226 , i a o 0000227 , i a o 0000228 , i a o 0000229 }
has super-classes
data about an ontology part c

oceanc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000015

A marine water body which is constitutes the majority of an astronomical body's hydrosphere.
has super-classes
body of water c
is disjoint with
sea c, lake c, estuary c

ontology filec back to ToC or Class ToC

ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000000

has super-classes
data about an ontology part c
has sub-classes
base ontology module c, bridge ontology module c, generated ontology module c, main release ontology module c, ontology slim subset ontology module c, reasoned ontology module c, source ontology module editors ontology module c

ontology module subsetted by expressivityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000017

has super-classes
ontology slim subset ontology module c
has sub-classes
obo basic subset ontology module c, ontology module subsetted by owl profile c

ontology module subsetted by owl profilec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000019

has super-classes
ontology module subsetted by expressivity c
has sub-classes
el++ ontology module c

ontology slimc back to ToC or Class ToC

subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000006

An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms.
has super-classes
ontology file ontology module c
has sub-classes
analysis subset ontology module c, antislim exclusion subset ontology module c, curation subset ontology module c, import file import ontology module c, ontology module subsetted by expressivity c, ribbon subset single layer subset ontology module c, taxon subset species subset ontology module c

oomycotac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_4762

has super-classes
stramenopiles c

opacityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000957

An optical quality which obtains by virtue of the ability of the bearer to absorb visible light.
has super-classes
optical quality c
has sub-classes
opaque c

opaquec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000963

A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy.
has super-classes
opacity c

opisthokontac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33154

has super-classes
eukaryota c
has sub-classes
bilateria c, fungi c
is disjoint with
haptista c, discoba c, sar c, rhodophyta c, cryptophyceae c, viridiplantae c, glaucocystophyceae c

optical qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001300

An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
has super-classes
electromagnetic (em) radiation quality c
has sub-classes
opacity c

organic materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000155

Environmental material derived from living organisms and composed primarily of one or more biomacromolecules.
has super-classes
environmental material c
is disjoint with
water c, permafrost c, clay c, silt c, sand c, particulate matter c, snow c, gaseous environmental material c, metallic material c, ice c

organismc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000054

See http://purl.obolibrary.org/obo/OBI_0100026
A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
is equivalent to
viruses c or bacteria c or archaea c or eukaryota c
has super-classes
material entity c
is disjoint with
geographic feature c, collection of organisms c, geographical entity c

organism characteristicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C171083

A characteristic or attribute inherent or inherited to an organism.
is equivalent to
trait c and (characteristic for op some organism c)
has super-classes
trait c
has sub-classes
phenotypic plasticity c
is disjoint with
environmental condition c, population group characteristic c, ecosystem property c

originc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C42703

The place where something begins or comes from in either the sense of a physical location or a metaphysical source.
has super-classes
conceptual entity c
is disjoint with
impact c, phenotype c, benefit c, event c, status c, taxon c, zone c, propagule pressure c, invasion phase c, estimate c, invasion success c

panarthropodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_88770

has super-classes
ecdysozoa c
has sub-classes
arthropoda c

pancrustaceac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_197562

has super-classes
mandibulata c
has sub-classes
crustacea c, hexapoda c

parasitec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000018

from https://www.thefreedictionary.com/parasite
An organism that lives and feeds on or in an organism of a different species and causes harm to its host.
has super-classes
enemy c
has sub-classes
ectoparasite c

particulate matterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000060

Particulate material is an environmental material which is composed of microscopic portions of solid or liquid material suspended in another environmental material.
is equivalent to
environmental material c and (surrounded by op some gaseous environmental material c or liquid environmental material c)
has super-classes
environmental material c
is disjoint with
permafrost c, soil c, clay c, silt c, sand c, organic material c, snow c, gaseous environmental material c, solid environmental material c, liquid environmental material c, metallic material c, ice c

perimeterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C71612

The size of something as given by the distance around it.
has super-classes
functional trait c
is disjoint with
length c, width c, height c, endurance c, mass c

permafrostc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000134

Ice is not always present, as may be in the case of nonporous bedrock, but it frequently occurs and it may be in amounts exceeding the potential hydraulic saturation of the ground material.
Soil or rock and included ice or organic material at or below the freezing point of water (0 degrees Celsius or 32 degrees Fahrenheit) for two or more years.
has super-classes
environmental material c
is disjoint with
water c, sediment c, clay c, silt c, sand c, particulate matter c, organic material c, snow c, gaseous environmental material c, liquid environmental material c, metallic material c

permeabilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000970

A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion).
has super-classes
structure c
has sub-classes
porosity c
is disjoint with
composition c

pHc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C45997

Quantity of dimension one used to express on a scale from 0 to 14 the amount-of-substance concentration of hydrogen ion of dilute aqueous solution, calculated as the logarithm of the reciprocal of hydrogen-ion concentration in gram atoms per liter.
has super-classes
environmental condition c
is disjoint with
fire incidence c, average annual precipitation c, mean annual temperature c

phenological changec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000035

Any change in the phenology of a species
has super-classes
change in individual c

phenotypec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C16977

The assemblage of traits or outward appearance of an individual. It is the product of interactions between genes and between genes and the environment.
has super-classes
conceptual entity c
has sub-classes
morphological phenotype c
is disjoint with
site c, impact c, place c, benefit c, event c, status c, taxon c, origin c, zone c, system c, propagule pressure c, area c, invasion phase c, estimate c, range c, trait c, invasion success c

phenotypic plasticityc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000090

The capacity of a genotype to produce different phenotypes in different environments.
has super-classes
organism characteristic c
is in domain of
has value op
is in range of
has increased levels of op

physical object qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001241

A quality which inheres in a continuant.
has super-classes
quality c
has sub-classes
morphology c, physical quality c

physical qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001018

A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
has super-classes
physical object quality c
has sub-classes
position c, quality of a substance c, radiation quality c, wetness c

physiological changec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000085

Any change in the physioloy of a species
has super-classes
change in individual c

pielou's evenness indexc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#PielousEvennessIndex

It's a representation of the evenness and quantifies how equal the community is numerically.
has super-classes
species evenness index c

piscesc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000071

has super-classes
vertebrata <metazoa> c
has sub-classes
actinopterygii c, chondrichthyes c, cyclostomata c, dipnomorpha c

placec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25319

A bounded physical location which may contain structures. EXAMPLE(S): ambulance, helicopter, manufacturing site, service delivery location, home, emergency department, surgical suite, patient room. NOTE(S): Constraints: Place may be natural or man-made. The geographic position of a place may or may not be constant. Discussion: Places may be work facilities (where relevant acts occur), homes (where people live) or offices (where people work). Places may contain sub-places (floor, room, booth, bed). Places may also be sites that are investigated in the context of health care, social work, public health administration (e.g., buildings, picnic grounds, day care centers, prisons, counties, states, and other focuses of epidemiological events).
has super-classes
conceptual entity c
is disjoint with
impact c, phenotype c, benefit c, event c, status c, taxon c, system c, propagule pressure c, invasion phase c, estimate c, trait c, invasion success c

plane angle measurement unit labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000789

has super-classes
measurement unit label c

plant diversityc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000080

Variety of plant species present in a location
has super-classes
biodiversity c
is disjoint with
animal diversity c

plant nutrientc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000061

chemical element required by plants to perform functions necessary for life
has super-classes
nutrient c

populationc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000093

Chase LeCroy, orcid.org/0000-0002-1338-9436
A population comprises all the individuals of a given species in a specific area or region at a certain time.
has super-classes
species c
is in domain of
has growth op, has mortality op, has natality op, has number of individuals op, has recruitment op, interacts with op
is in range of
interacts with op, is growth of op, is mortality of op, is natality of op, is recruitment of op

population densityc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000082

From http://www.fao.org/aims/aos/cwr.owl#PopulationDensity
The number of individuals per unit area.
has super-classes
population group characteristic c
is disjoint with
population size c

population group characteristicc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C171088

A characteristic or attribute of a population group.
is equivalent to
trait c and (characteristic for op some population c)
has super-classes
trait c
has sub-classes
population density c, population size c
is disjoint with
environmental condition c, organism characteristic c, morphological feature c, ecosystem property c, functional trait c, species trait c

population of organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000001

A collection of organisms, all of the same species, that live in the same place.
is equivalent to
single-species collection of organisms c and (has area op exactly 1 area c)

population sizec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000004

From http://www.fao.org/aims/aos/cwr.owl#PopulationSize
It's the amount of individuals in a population
has super-classes
population group characteristic c
is disjoint with
population density c

population survivalc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000076

The process of remaining alive or in existence.
has super-classes
invasion success c
is disjoint with
ecological impact c

porosityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000973

A permeability quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices.
has super-classes
permeability c
has sub-classes
porosity of soil c, porous c

porosity of soilc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_09200004

The porosity of some soil.
is equivalent to
structure of soil c and porosity c
has super-classes
porosity c, structure of soil c
is disjoint with
composition of soil c

porousc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000984

A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices.
has super-classes
porosity c

positionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000140

A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
has super-classes
physical quality c
has sub-classes
displaced c, elevation c
is disjoint with
radiation quality c, wetness c, quality of a substance c

precipitation processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000875

A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force.
has super-classes
material transport process c

predatorc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000008

from https://www.thefreedictionary.com/predator
An organism that lives by preying on other organisms.
has super-classes
enemy c

presencec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000031

Being or existing in a specified place or at the specified time.
has super-classes
status c
is disjoint with
successful c, absence c, in progress c

primary nutrientc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000072

chemical elements required by organisms in large amounts; for plants, these are nitrogen, phosphorus, and potassium
has super-classes
nutrient c

primatesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_9443

has super-classes
euarchontoglires c
has sub-classes
haplorrhini c

processc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000025

See NCIt:C29862
A process is an entity that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity during the time it occurs.
has sub-classes
allocation c, biological process c, change c, community dynamics c, human activity c, invasion c, involvement c
is in domain of
enabled by op, has input op, has output op, has participant op, has status op, occurs in op
is in range of
capable of op, is status of op, output of op, participates in op
is disjoint with
role c

propagule pressurec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000011

A composite measure consisting of the number of individuals introduced per introduction event and the frequency of introduction events.
has super-classes
conceptual entity c
is in domain of
has value op
is in range of
has propagule pressure op
is disjoint with
site c, impact c, phenotype c, place c, benefit c, event c, status c, taxon c, origin c, zone c, system c, area c, invasion phase c, estimate c, range c, trait c, invasion success c

protostomiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33317

has super-classes
bilateria c
has sub-classes
ecdysozoa c, spiralia c
is disjoint with
deuterostomia c

protozoac back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000056

has super-classes
taxon c
is disjoint with
viruses c, bacteria c, archaea c, algae c

qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000001

A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
has super-classes
specifically dependent continuant c
has sub-classes
physical object quality c
is in domain of
quality of op
is in range of
has quality op

quality of a substancec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002198

A quality inhering in a bearer by virtue of its constitution.
has super-classes
physical quality c
is disjoint with
position c

quantityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25256

How much there is of something that you can measure; the total amount or number.
has super-classes
estimate c
has sub-classes
total number c

radiationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001023

A process during which energy is emitted or transmitted in the form of waves or particles through space or a material medium.
has super-classes
environmental system process c

radiation qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001739

A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.
has super-classes
physical quality c
has sub-classes
electromagnetic (em) radiation quality c
is disjoint with
position c, wetness c

rangec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000045

An area where a species is found in the wild.
has super-classes
conceptual entity c
has sub-classes
alien range c, geographical distribution c, native range c
is disjoint with
impact c, phenotype c, benefit c, event c, status c, taxon c, system c, propagule pressure c, invasion phase c, estimate c, trait c, invasion success c

reasoned ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000013

An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available.
has super-classes
ontology file ontology module c

recruitmentc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#Recruitment

It's the rate on which new individuals establishes in a certain community either by new born individuals or immigration.
has super-classes
life history trait c
is in domain of
is recruitment of op
is in range of
has recruitment op
is disjoint with
death rate c, longevity c, generation length c

regionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C41129

An area or portion of something with more or less definite boundaries designed or specified according to some established biological, administrative, economic, demographic, etc. criteria.
has super-classes
geographical entity c
has sub-classes
geographical region c, neighborhood c
is in domain of
has spatial occupant at some time op
is in range of
occupies spatial region at some time op

reproductionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GO_0000003

The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.
is equivalent to
biological process c and (affects op some population size c) and (has output op some organism c)
has super-classes
biological process c
is in domain of
is enhanced by op
is in range of
enhance op
is disjoint with
ecosystem process c, growth c, host organism interaction c

reptiliac back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000048

has super-classes
vertebrata <metazoa> c
has sub-classes
crocodylia c, lepidosauria c, testudines c

resistancec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000021

staying essentially unchanged despite the presence of disturbances
has super-classes
ecosystem property c
is disjoint with
diversity c

resourcec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000079

Abiotic environmental factor necessary for survival, growth, and reproduction, such as water, light, mineral nutrients, and various forms of fixed carbon (e.g. plant material or meat).
has super-classes
material entity c
has sub-classes
energy c, environmental material c, light c, nutrient c
is in domain of
enhance op
is in range of
allocates op, is enhanced by op
is disjoint with
geographic feature c, collection of organisms c

rhizariac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_543769

has super-classes
sar c
has sub-classes
cercozoa c

rhodophytac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2763

has super-classes
algae c, eukaryota c
is disjoint with
haptista c, discoba c, sar c, cryptophyceae c, viridiplantae c, opisthokonta c, glaucocystophyceae c

ribbon subsetc back to ToC or Class ToC

single layer subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000009

A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint.
has super-classes
ontology slim subset ontology module c

rockc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00001995

From https://en.wikipedia.org/wiki/ [A mineral] is different from a rock, which can be an aggregate of minerals or non-minerals and does not have a specific chemical composition. The exact definition of a mineral is under debate, especially with respect to the requirement a valid species be abiogenic, and to a lesser extent with regards to it having an ordered atomic structure.
A rock is a naturally occurring solid aggregate of one or more minerals or mineraloids.
has super-classes
solid environmental material c
is disjoint with
mineral material c, water ice c

rolec back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000023

See http://purl.obolibrary.org/obo/NCIT_C48835
The usual or expected function of something; the part something plays in an action or event.
is equivalent to
has role op some role c
has sub-classes
enemy c
is in domain of
role of op
is in range of
has role op
is disjoint with
process c

rural areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C178430

A non-urbanized geographic area. "Rural" encompasses densely settled small towns with a residential population of less than 2,500 people, more sparsely populated areas, and remote areas.
has super-classes
Geographic Area c
is disjoint with
urbanized area c

saline environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001040

The thresholds for "significant" concentrations of salts vary widely and thus no committment is made in this class. Subclasses with more explicit thresholds can be made upon request.
An environment which is determined by materials which bear significant concentrations of salts.
has super-classes
environmental system c, environmental system determined by a material c, high osmolarity environment c

saline hydrographic featurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000017

A geographical feature associated with water with a halinity above 30 ppt (roughly 35 g/L).
has super-classes
hydrographic feature c

saline lakec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000019

A lake whose water contains a considerable concentration of dissolved salts.
has super-classes
lake c

saline wetlandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000240

It would be more correct to say that this has_quality salty or has_part ((soil and water) and has_increased_levels_of salt.
has super-classes
wetland area c

sandc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000017

A naturally occurring granular material composed of finely divided rock and mineral particles.
has super-classes
environmental material c
is disjoint with
water c, permafrost c, clay c, silt c, particulate matter c, organic material c, snow c, gaseous environmental material c, liquid environmental material c, metallic material c, ice c

sarc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2698737

has super-classes
eukaryota c
has sub-classes
alveolata c, rhizaria c, stramenopiles c
is disjoint with
haptista c, discoba c, rhodophyta c, cryptophyceae c, viridiplantae c, opisthokonta c, glaucocystophyceae c

sarcopterygiic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8287

has super-classes
euteleostomi c
has sub-classes
dipnotetrapodomorpha c

sauriac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32561

has super-classes
sauropsida c
has sub-classes
archelosauria c, lepidosauria c

saurischiac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_436489

has super-classes
dinosauria c
has sub-classes
theropoda c

sauropsidac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8457

has super-classes
amniota c
has sub-classes
sauria c
is disjoint with
mammalia c

scalar measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000032

a scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label.
Term status
http://purl.obolibrary.org/obo/IAO_0000120
Example
10 feet. 3 ml.
has super-classes
measurement datum c

scalar value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001931

A value specification that consists of two parts: a numeral and a unit label
Term status
http://purl.obolibrary.org/obo/IAO_0000123
has super-classes
value specification c

seac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000016

A large expanse of saline water usually connected with an ocean.
has super-classes
body of water c
is disjoint with
ocean c, lake c, estuary c

sea surface layerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001581

At this level, the depth of this layer is ambiguous. Some methods (telemetry) measure only the first few centimeters of the sea or ocean surface. In situ methods often sample the first few meters. Subclasses can be created for such cases.
A surface layer of a water body which is part of an ocean or sea.
is equivalent to
surface layer of a water body c and (part of op some ocean c or sea c)
has super-classes
marine layer c, surface layer of a water body c

secondary nutrientc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000028

chemical elements required by organisms in moderate amounts; for plants, these are e.g. sulfur, calcium and magnesium
has super-classes
nutrient c

sectionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C48956

A distinct region or subdivision of a territorial or political area or community.
has super-classes
Geographic Area c

sedimentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00002007

It is recommended to use a combination of sediment terms to describe a more specific sediment type.
Sediment is an environmental substance comprised of any particulate matter that can be transported by fluid flow and which eventually is deposited as a layer of solid particles on the bedor bottom of a body of water or other liquid.
has super-classes
environmental material c
has sub-classes
marine sediment c
is disjoint with
water c, permafrost c, snow c, gaseous environmental material c, liquid environmental material c

sediment environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001048

An environmental system which has its properties and dynamics determined by sediment.
has super-classes
environmental system c, environmental system determined by a material c

sediment surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001192

The surface layer of a mass of sediment.
is equivalent to
surface layer c and (part of op some sediment c)
has super-classes

sedimentation in a water bodyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_03000036

A material accumulation process during which solid particles are pulled through a water body by gravitation or centrifugal force and which ends when they settle on a solid surface.
is equivalent to
material accumulation process c and (has part op some precipitation process c) and (occurs in op some body of water c) and (has participant op some particulate matter c) and (ends op some material transport process c)
has super-classes
material accumulation process c

shannon's diversity indexc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#shannonsDiversityIndex

has super-classes
species diversity index c

shapec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000052

A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
has super-classes
morphology c
has sub-classes
elongated c, sloped c
is disjoint with
amorphous c

shorec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000304

That part of the land in immediate contact with a body of water including the area between high and low water lines.
is equivalent to
land c and (adjacent to op some body of water c)
has super-classes
hydrographic feature c, land c
is disjoint with
marine pelagic feature c

siltc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000016

https://en.wikipedia.org/wiki/ In the Udden-Wentworth scale (due to Krumbein), silt particles range between 0.0039 to 0.0625 mm, larger than clay but smaller than sand particles. ISO 14688 grades silts between 0.002 mm and 0.063 mm. In actuality, silt is chemically distinct from clay, and unlike clay, grains of silt are approximately the same size in all dimensions; furthermore, their size ranges overlap. Clays are formed from thin plate-shaped particles held together by electrostatic forces, so present a cohesion. According to the U.S. Department of Agriculture Soil Texture Classification system, the sand-silt distinction is made at the 0.05 mm particle size. The USDA system has been adopted by the Food and Agriculture Organization (FAO). In the Unified Soil Classification System (USCS) and the AASHTO Soil Classification system, the sand-silt distinction is made at the 0.075 mm particle size (i.e., material passing the #200 sieve). Silts and clays are distinguished mechanically by their plasticity.
Silt is granular material of a size somewhere between sand and clay whose mineral origin is quartz and feldspar.
has super-classes
environmental material c
is disjoint with
water c, permafrost c, clay c, sand c, particulate matter c, organic material c, snow c, gaseous environmental material c, liquid environmental material c, ice c

simiiformesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_314293

has super-classes
haplorrhini c
has sub-classes
catarrhini c

simpson's indexc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#SimpsonsIndex

The simplest measure of the character of a community that takes into account both the abundance (or biomass) patterns and the species richness (Begon et al., 2006).
has super-classes
species diversity index c

single-species collection of organismsc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PCO_0000018

A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species.
is equivalent to
collection of organisms c and (has part op exactly 1 species c)
has super-classes
collection of organisms c
is disjoint with
multi-species collection of organisms c, community c

sitec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000029

has super-classes
conceptual entity c
is disjoint with
impact c, phenotype c, benefit c, event c, status c, taxon c, system c, propagule pressure c, invasion phase c, estimate c, trait c, invasion success c

sizec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000117

A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
has super-classes
morphology c
is disjoint with
structure c

slopedc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001481

A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction.
has super-classes
shape c
has sub-classes
sloped downward c

sloped downwardc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0002143

has super-classes
sloped c

snowc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000406

Snow is an environmental material which is primarily composed of flakes of crystalline water ice.
is equivalent to
environmental material c and (output of op some snowfall c)
has super-classes
environmental material c
is disjoint with
permafrost c, soil c, sediment c, clay c, silt c, sand c, particulate matter c, organic material c, gaseous environmental material c, liquid environmental material c, metallic material c

snowfallc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000895

A hydrological process in which irregular aggregates of snow fall to a planetary surface.
is equivalent to
hydrological precipitation process c and (has participant op some snow c)

soilc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00001998

'In engineering terms, soil is referred to as regolith, or loose rock material that lies above the 'solid geology'. Soil is commonly referred to as "earth" or "dirt"; technically, the term "dirt" should be restricted to displaced soil.' https://en.wikipedia.org/wiki/Soil " The upper limit of soil is the boundary between soil and air, shallow water, live plants, or plant materials that have not begun to decompose. Areas are not considered to have soil if the surface is permanently covered by water too deep (typically more than 2.5 meters) for the growth of rooted plants. The lower boundary that separates soil from the nonsoil underneath is most difficult to define. Soil consists of horizons near the Earth's surface that, in contrast to the underlying parent material, have been altered by the interactions of climate, relief, and living organisms over time. Commonly, soil grades at its lower boundary to hard rock or to earthy materials virtually devoid of animals, roots, or other marks of biological activity. For purposes of classification, the lower boundary of soil is arbitrarily set at 200 cm." Soil taxonomy, 2nd Ed., quoted in http://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/edu/?cid=nrcs142p2_054280
Soil is an environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, gases, liquids, and a broad range of resident micro- and macroorganisms.
has super-classes
environmental material c
has sub-classes
enriched soil c, frozen soil c
is disjoint with
water c, particulate matter c, snow c, gaseous environmental material c, liquid environmental material c, metallic material c

soil environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001044

An environmental system which has its properties and dynamics determined by soil.
has super-classes
environmental system c, environmental system determined by a material c, environmental system determined by a quality c

solid environmental materialc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000814

This is a defined class: its subclasses will not be asserted, but filled by inference.
An environmental material which is in a solid state.
has super-classes
environmental material c
has sub-classes
mineral material c, rock c, water ice c
is disjoint with
particulate matter c, gaseous environmental material c, liquid environmental material c

solid layerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001275

A layer which is primarily composed of some solid material, allowing for non-solid parts such as interstitial pockets of gas or liquid.
has super-classes
layer c
is disjoint with
atmosphere c

solid surface layerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001311

A surface layer which is composed primarily of solid environmental material.
has super-classes
surface layer c
is disjoint with
liquid layer c

source ontology modulec back to ToC or Class ToC

editors ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000002

An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users.
has super-classes
ontology file ontology module c

specialistc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000055

A species that can survive and reproduce only within a narrow range of environmental conditions using specific resources (e.g., a specific diet).
has super-classes
enemy c
is disjoint with
generalist c

speciesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C45293

A group of organisms that differ from all other groups of organisms and that are capable of breeding and producing fertile offspring.
has super-classes
taxon c
has sub-classes
alien species c, native species c, population c
is in domain of
allocates op, decreases effort in op, has alien range op, has distribution op, has habitat op, has increased levels of op, has invasion success likelihood dp, has native range op, has range op, has role op, has specific name dp, increases effort in op, interacts with op, is absent op, is closely related to op, is enemy of op, is prey of op, is similar to op, spatially coextensive with op
is in range of
has decreased effort level by op, has increased effort level by op, interacts with op, is alien range to op, is closely related to op, is enemy of op, is habitat of op, is native range to op, is prey of op, is range of op, is similar to op, spatially coextensive with op

species diversityc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000010

has super-classes
biodiversity c

species diversity indexc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000030

the effective number of different species that are represented in a collection of individuals, it consists of two components: species richness and species evenness. From http://cerrado.linkeddata.es/ecology/ccon#SpeciesDiversity
has super-classes
diversity index c
has sub-classes
Sørensen–dice index c, shannon's diversity index c, simpson's index c

species evennessc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#SpeciesEvenness

Evenness is simply a measure of how similar specie are in their abundances.
has super-classes
biodiversity c
is disjoint with
species richness c

species evenness indexc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000039

has super-classes
diversity index c
has sub-classes
pielou's evenness index c

species richnessc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#SpeciesRichness

the number of differnet species represented in an ecological community, landscape or region
has super-classes
biodiversity c
is disjoint with
species evenness c

species richness indexc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000087

has super-classes
diversity index c

species traitc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000050

from https://doi.org/10.1016/j.tree.2006.02.002
A well-defined, measurable property of organisms, usually measured at the individual level and used comparatively across species.
is equivalent to
trait c and (characteristic for op some species c)
has super-classes
trait c
is in domain of
has level of op
is disjoint with
environmental condition c, population group characteristic c, ecosystem property c

specifically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000020

A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
has super-classes
continuant c
has sub-classes
quality c
is disjoint with
independent continuant c, generically dependent continuant c, independent continuant c, generically dependent continuant c

spiraliac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2697495

has super-classes
protostomia c
has sub-classes
lophotrochozoa c

statusc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25688

A condition or state at a particular time.
has super-classes
conceptual entity c
has sub-classes
absence c, in progress c, presence c, successful c
is in domain of
is status of op
is in range of
has status op
is disjoint with
site c, impact c, phenotype c, place c, event c, taxon c, origin c, zone c, system c, propagule pressure c, area c, invasion phase c, estimate c, range c, trait c

stramenopilesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33634

has super-classes
algae c, sar c
has sub-classes
oomycota c

strengthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001230

A quality inhering in a bearer by virtue of the bearer's power or force.
has super-classes
compound property c
has sub-classes
competitive strength c

streptophytac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_35493

has super-classes
viridiplantae c
has sub-classes
streptophytina c

streptophytinac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_131221

has super-classes
streptophyta c
has sub-classes
embryophyta c

structurec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0000141

A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
has super-classes
morphology c
has sub-classes
composition c, laminar c, permeability c, structure of soil c
is disjoint with
size c

structure of soilc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_09200009

The structure of some soil.
has super-classes
structure c
has sub-classes
composition of soil c, porosity of soil c

subcontinentc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000084

from https://www.thefreedictionary.com/subcontinent
A large landmass, such as India, that is part of a continent but is considered either geographically or politically as an independent entity.
has super-classes
land c

subcontinental land massc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/GEO_000000334

has super-classes
land mass c
has sub-classes
contiguous island land mass c, contiguous land mass c

subsetc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#Subset

is equivalent to
{ i a o 0000224 }
has super-classes
data about an ontology part c

successfulc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000014

has super-classes
status c
is disjoint with
presence c, absence c, in progress c

surface layerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00010504

This class is distinct from a geometric surface, which is two-dimensional. The idea of "uppermost" may be problematic. Further, the definition of layer (the superclass of surface in rev 133) references surface. This may be another issue. Perhaps this can be made into an inferred class using 'bounding layer of' some material entity, note that 'bounding layer' implies containment, which may not be valid here.
A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.
has super-classes
layer c
has sub-classes
liquid layer c, solid surface layer c
is disjoint with
atmosphere c

surface layer of a water bodyc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001554

A water surface that is part of a water body.
is equivalent to
water surface c and (part of op some body of water c)
has super-classes
water surface c
has sub-classes
sea surface layer c

symbiosisc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000033

See http://purl.bioontology.org/ontology/CSP/1035-7338
state of close, permanent, or obligatory contact between 2 species, usually of a mutually beneficial nature.
has super-classes
host organism interaction c

synonymc back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#Synonym

has super-classes
data about an ontology part c

synonym typec back to ToC or Class ToC

IRI: http://www.geneontology.org/formats/oboInOwl#SynonymType

has super-classes
data about an ontology part c

systemc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000000

See http://purl.obolibrary.org/obo/RO_0002577
A material entity consisting of multiple components that are causally integrated.
has super-classes
conceptual entity c
has sub-classes
environmental system c
is in domain of
has area op
is in range of
determines op
is disjoint with
site c, impact c, phenotype c, place c, benefit c, event c, status c, taxon c, zone c, propagule pressure c, area c, invasion phase c, estimate c, range c, trait c, invasion success c

Sørensen–dice indexc back to ToC or Class ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#SorensensSimilarityIndex

has super-classes
species diversity index c

taxonc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C40098

Ranked categories for the classification of organisms according to their suspected evolutionary relationships.
has super-classes
conceptual entity c
has sub-classes
algae c, archaea c, bacteria c, eukaryota c, protozoa c, species c, viruses c
is disjoint with
site c, impact c, phenotype c, place c, benefit c, event c, status c, origin c, zone c, system c, propagule pressure c, area c, invasion phase c, estimate c, range c, trait c, invasion success c

taxon subsetc back to ToC or Class ToC

species subset ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000012

A subset ontology that is crafted to either include or exclude a taxonomic grouping of species.
has super-classes
ontology slim subset ontology module c

taxonomic bridge ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000016

has super-classes
bridge ontology module c

teleostomic back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_117570

has super-classes
gnathostomata <vertebrate> c
has sub-classes
euteleostomi c

template generated ontology modulec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_8000015

An ontology module that is automatically generated from a template specification and fillers for slots in that template.
has super-classes
generated ontology module c

terrestrial ecoregionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001570

An ecoregion which is located on a landmass.
is equivalent to
ecoregion c and (located in op some land mass c)
has super-classes
ecoregion c

terrestrial environmental zonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001199

An environmental zone which is bounded by material parts of a land mass or the atmosphere or space adjacent to it.
has super-classes
environmental zone c
has sub-classes
vegetated area c
is disjoint with
marine environmental zone c, atmospheric zone c

terrestrial natural environmentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001226

A natural environment which is located on a land mass.
is equivalent to
natural environment c and (part of op some land mass c)
has super-classes
natural environment c
is disjoint with
aquatic natural environment c

testudinatac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_2841271

has super-classes
archelosauria c
has sub-classes
testudines c

testudinesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_8459

has super-classes
reptilia c, testudinata c

tetrapodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32523

has super-classes
dipnotetrapodomorpha c
has sub-classes
amniota c, amphibia c
is disjoint with
dipnomorpha c

theria <mammalia>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_32525

has super-classes
mammalia c
has sub-classes
eutheria c

theropodac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_436491

has super-classes
saurischia c
has sub-classes
coelurosauria c

total numberc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C127787

A measurement of the total number of entities.
has super-classes
quantity c
is in range of
has number of individuals op

trace elementc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000086

See http://purl.bioontology.org/ontology/MESH/D014131
A group of chemical elements that are needed in minute quantities for the proper growth, development, and physiology of an organism. (From McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed)
has super-classes
nutrient c

tracheophytac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_58023

has super-classes
embryophyta c

traitc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000059

from http://purl.obolibrary.org/obo/NCIT_C25447
The distinguishing qualities or prominent aspect of a person, object, action, process, or substance.
has super-classes
conceptual entity c
has sub-classes
compound property c, ecosystem property c, environmental condition c, functional trait c, genetic characteristic c, life history trait c, morphological feature c, organism characteristic c, population group characteristic c, species trait c
is disjoint with
site c, impact c, phenotype c, place c, benefit c, event c, status c, taxon c, zone c, system c, propagule pressure c, area c, invasion phase c, estimate c, range c, invasion success c

undisturbed ecosystemc back to ToC or Class ToC

IRI: https://w3id.org/inbio#_000081

An ecosystem that has not been subject to disturbance.
has super-classes
ecosystem c
is disjoint with
disturbed ecosystem c

urbanized areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C178428

A delineated geographic area encompassing residential, commercial, and other non-residential urban land uses with a residential population of 50,000 or more people and a density of 1,000 people or more per square mile.
has super-classes
Geographic Area c
is disjoint with
rural area c

value specificationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001933

An information content entity that specifies a value within a classification scheme or on a quantitative scale.
Term status
http://purl.obolibrary.org/obo/IAO_0000122
Example
The value of 'positive' in a classification scheme of "positive or negative"; the value of '20g' on the quantitative scale of mass.
has super-classes
information content entity c
has sub-classes
scalar value specification c
is in domain of
has measurement unit label op

vegetated areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001305

A vegetated area is a geographic feature which has ground cover dominated by plant communities.
has super-classes
terrestrial environmental zone c
has sub-classes
wetland area c

vertebrata <metazoa>c back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_7742

has super-classes
craniata <chordata> c
has sub-classes
gnathostomata <vertebrate> c, pisces c, reptilia c

viridiplantaec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_33090

has super-classes
eukaryota c
has sub-classes
chlorophyta c, streptophyta c
is disjoint with
haptista c, discoba c, sar c, rhodophyta c, cryptophyceae c, opisthokonta c, glaucocystophyceae c

virusesc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCBITaxon_10239

has super-classes
taxon c
is disjoint with
bacteria c, archaea c, eukaryota c, protozoa c, algae c

waterc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CHEBI_15377

has super-classes
environmental material c
has sub-classes
liquid water c, water ice c
is disjoint with
permafrost c, soil c, sediment c, clay c, silt c, sand c, organic material c, metallic material c

water flow processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000982

A process during which a volume of water is transported due to a disequilibria in physical forces.
is equivalent to
mass liquid flow c and hydrological process c and (has participant op some liquid water c)
has super-classes
hydrological process c, mass liquid flow c
is disjoint with
hydrological condensation process c

water icec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000277

Ice is water frozen into a solid state. It can appear transparent or opaque bluish-white color, depending on the presence of impurities or air inclusions. The addition of other materials such as soil may further alter its appearance.
is equivalent to
water c and solid environmental material c
has super-classes
solid environmental material c, water c
is disjoint with
rock c, mineral material c

water ice layerc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001276

A layer which is primarily composed of some solid material, allowing for non-solid parts such as interstitial pockets of gas or liquid.
is equivalent to
glacial feature c and solid layer c

water surfacec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001191

The surface layer of a volume of water.
has super-classes
aquatic layer c
has sub-classes
surface layer of a water body c

water vapourc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01000266

Perhaps a better relation between water vapour and water can be found in or added to RO?
Water vapour is a vapour which is the gas phase of water.
is equivalent to
gaseous environmental material c and (contains op some water c)
has super-classes
gaseous environmental material c
has sub-classes
atmospheric water vapour c

wetc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001823

A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid.
has super-classes
wetness c

wetland areac back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_00000043

An vegetated area which overlaps a wetland ecosystem.
is equivalent to
vegetated area c and (overlaps op some wetland ecosystem c)
has super-classes
vegetated area c
has sub-classes
saline wetland c

wetland ecosystemc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_01001209

A terrestrial ecosystem which is inundated or saturated by surface or ground water at a frequency and duration sufficient to support, and that under normal circumstances does support, a prevalence of vegetation typically adapted for life in saturated soil conditions.
has super-classes
ecosystem c
is disjoint with
environmental system determined by an organism c, environment associated with an animal part or small animal c, environment associated with a plant part or small plant c

wetnessc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/PATO_0001822

A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid.
has super-classes
physical quality c
has sub-classes
wet c, wetness of soil c
is disjoint with
position c, radiation quality c

wetness of soilc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/ENVO_09200013

The wetness of some soil.
has super-classes
wetness c

widthc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25345

The extent or measurement of something from side to side.
has super-classes
functional trait c, morphological feature c
is disjoint with
height c, color c, perimeter c, endurance c, mass c

zonec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C43428

An area or region distinguished from adjacent parts by a distinctive feature or characteristic.
has super-classes
conceptual entity c
has sub-classes
environmental zone c
is disjoint with
impact c, phenotype c, benefit c, event c, status c, taxon c, origin c, system c, propagule pressure c, invasion phase c, estimate c, trait c, invasion success c

Object Properties

achievesop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000117

has domain
alien species c
has range
invasion success c

adjacent toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002220

x adjacent to y if and only if x and y share a boundary.
Term status
http://purl.obolibrary.org/obo/IAO_0000125

has characteristics: symmetric

has sub-properties
surrounded by op, surrounds op
has domain
independent continuant c
has range
independent continuant c

affectsop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#affects

has sub-properties
decreases op, increases op
is inverse of
is affected by op

allocatesop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000119

has domain
species c
has range
resource c

capable ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002215

For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
Source
http://www.ncbi.nlm.nih.gov/pubmed/20123131
http://www.ncbi.nlm.nih.gov/pubmed/21208450
Term status
http://purl.obolibrary.org/obo/IAO_0000125
has domain
material entity c
has range
process c

characteristic forop back to ToC or Object Property ToC

IRI: http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#characteristicFor

http://ecoinformatics.org/oboe/oboe.1.1/oboe-core.owl#characteristicFor

completed invasion phaseop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000102

has domain
alien species c
has range
invasion phase c

contained inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001018

has domain
material entity c
has range
independent continuant c
is inverse of
contains op
has sub-property chains
located in op o part of op

containsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001019

has domain
independent continuant c
has range
material entity c
is inverse of
contained in op

contributes toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002326

In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology.
Source
http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to

decreasesop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#decreases

has super-properties
affects op
has domain
average annual precipitation c

decreases effort inop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000110

has domain
species c
has range
defense c
is inverse of
has decreased effort level by op

derives fromop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001000

This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations.
a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
Term status
http://purl.obolibrary.org/obo/IAO_0000125
has domain
material entity c
has range
material entity c
is inverse of
derives into op

derives intoop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001001

a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
Term status
http://purl.obolibrary.org/obo/IAO_0000125
has domain
material entity c
has range
material entity c
is inverse of
derives from op

determinesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002508

has domain
material entity c
has range
system c

enabled byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002333

has super-properties
has domain
process c
has range
material entity c

endsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002229

Term status
http://purl.obolibrary.org/obo/IAO_0000125
has super-properties
part of op
is inverse of
ends with op

ends duringop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002093

ends withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002230

Term status
http://purl.obolibrary.org/obo/IAO_0000125

has characteristics: transitive

has super-properties
has part op
is inverse of
ends op

enhanceop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000115

has domain
resource c
has range
reproduction c
growth c
defense c
is inverse of
is enhanced by op

facilitateop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000100

has domain
invasive species c
has range
alien species c

has alien rangeop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000118

alien range: range in which the species is not commonly found
has super-properties
has range op
has domain
species c
has range
area c
is inverse of
is alien range to op

has areaop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000120

has domain
system c
has range
area c

has componentop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#hasComponent

is inverse of
is part of op

has decreased effort level byop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000113

has domain
defense c
has range
species c
is inverse of
decreases effort in op

has distributionop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#hasDistribution

has domain
species c
has range
area c
is inverse of
is range of op

has growthop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#hasGrowth

has domain
population c
has range
growth c
is inverse of
is growth of op

has habitatop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002303

has domain
species c
has range
habitat c
is inverse of
is habitat of op

has increased effort level byop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000101

has domain
defense c
has range
species c
is inverse of
increases effort in op

has increased levels ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/envo#has_increased_levels_of

has domain
ecosystem c
species c
has range
biodiversity c
phenotypic plasticity c

has indexop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000103

has domain
biodiversity c
has range
diversity index c

has inputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002233

Term status
http://purl.obolibrary.org/obo/IAO_0000125
has super-properties
has participant op
has domain
process c
has range
material entity c

has level ofop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000109

has domain
species trait c

has measurementop back to ToC or Object Property ToC

IRI: http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasMeasurement

http://ecoinformatics.org/oboe/oboe.1.1/oboe-core.owl#hasMeasurement

has measurement unit labelop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000039

A relation between a value specification and its unit of measurement.
has super-properties
has part op
has domain
value specification c
has range
measurement unit label c

has mortalityop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#hasMortality

has domain
population c
has range
death rate c
is inverse of
is mortality of op

has natalityop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#hasNatality

has domain
population c
has range
birth rate c
is inverse of
is natality of op

has native rangeop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000129

native range: range in which the species is commonly found
has super-properties
has range op
has domain
species c
has range
area c
is inverse of
is native range to op

has number of individualsop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#hasNumberOfIndividuals

has domain
population c
has range
total number c

has outputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002234

Term status
http://purl.obolibrary.org/obo/IAO_0000125
has super-properties
has participant op
has domain
process c
has range
continuant c
is inverse of
output of op
has sub-property chains
ends with op o has output op

has partop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000051

a core relation that holds between a whole and its part

has characteristics: transitive

has super-properties
overlaps op
has sub-properties
ends with op, has measurement unit label op
is inverse of
part of op

has part structure that is capable ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002584

s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
Example
gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'
has domain
material entity c
has sub-property chains
has part op o capable of op

has participantop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000057

a relation between a process and a continuant, in which the continuant is somehow involved in the process
Example
this process has participant this input material (or this output material)
has sub-properties
has input op, has output op
has domain
process c
has range
continuant c
is inverse of
participates in op
has sub-property chains
has part op o has participant op

has propagule pressureop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000121

has domain
alien species c
has range
propagule pressure c

has qualityop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000086

a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence
Example
this apple has quality this red color
has domain
independent continuant c
has range
quality c
is inverse of
quality of op

has rangeop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000106

has sub-properties
has alien range op, has native range op
has domain
species c
has range
area c
is inverse of
is range of op

has recruitmentop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#hasRecruitment

has domain
population c
has range
recruitment c
is inverse of
is recruitment of op

has roleop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000128

has domain
species c
has range
role c

has spatial occupant at some timeop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000123

[copied from inverse property 'occupies spatial region at some time'] b occupies_spatial_region r at t means that r is a spatial region in which independent continuant b is exactly located (axiom label in BFO2 Reference: [041-002])
Is defined by
http://purl.obolibrary.org/obo/bfo.owl
has domain
region c
has range
independent continuant c
is inverse of
occupies spatial region at some time op

has statusop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000105

has domain
process c
has range
status c
is inverse of
is status of op

has valueop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000124

has characteristics: functional

has domain
biodiversity c
diversity index c
propagule pressure c
phenotypic plasticity c

increasesop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#increases

has super-properties
affects op
has domain
average annual precipitation c

increases effort inop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000108

has domain
species c
has range
defense c
is inverse of
has increased effort level by op

interacts withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002434

Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
Example
https://github.com/oborel/obo-relations/wiki/InteractionRelations

has characteristics: symmetric

has domain
material entity c
species c
population c
has range
material entity c
species c
population c

is absentop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000099

has domain
species c
has range
area c

is affected byop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#isAffectedBy

is inverse of
affects op

is againstop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000127

has domain
defense c
has range
enemy c

is aggregate ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000075

is alien range toop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000126

has super-properties
is range of op
has domain
area c
has range
species c
is inverse of
has alien range op

is characteristic ofop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#isCharacteristicOf

is inverse of
is characterized by op

is characterized byop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#isCharacterizedBy

is inverse of
is characteristic of op

is closely related toop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000111

Two species are closely related if they split apart from each other relatively recently during their evolution..
has domain
species c
has range
species c

is enemy ofop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000112

enemy in sense of http://www.semanticweb.org/rs/ontologies/INBIO#enemy
has domain
species c
has range
species c
is inverse of
is prey of op

is enhanced byop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000114

has domain
reproduction c
growth c
defense c
has range
resource c
is inverse of
enhance op

is growth ofop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#isGrowthOf

has domain
growth c
has range
population c
is inverse of
has growth op

is habitat ofop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#isHabitatOf

has domain
habitat c
has range
species c
is inverse of
has habitat op

is in invasion phaseop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000107

has domain
alien species c
has range
invasion phase c

is mortality ofop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#isMortalityOf

has domain
death rate c
has range
population c
is inverse of
has mortality op

is natality ofop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#isNatalityOf

has domain
birth rate c
has range
population c
is inverse of
has natality op

is native range toop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000104

has super-properties
is range of op
has domain
area c
has range
species c
is inverse of
has native range op

is part ofop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#isPartOf

is inverse of
has component op

is prey ofop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000123

has domain
species c
has range
species c
is inverse of
is enemy of op

is range ofop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000116

has sub-properties
is alien range to op, is native range to op
has domain
area c
has range
species c
is inverse of
has distribution op, has range op

is recruitment ofop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#isRecruitmentOf

has domain
recruitment c
has range
population c
is inverse of
has recruitment op

is similar toop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000125

has characteristics: symmetric

has domain
species c
has range
species c

is status ofop back to ToC or Object Property ToC

IRI: http://cerrado.linkeddata.es/ecology/ccon#isStatusOf

has domain
status c
has range
process c
is inverse of
has status op

located inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001025

a relation between two independent continuants, the target and the location, in which the target is entirely within the location
Example
this rat is located in this cage

has characteristics: transitive

has domain
independent continuant c
has range
independent continuant c
is inverse of
location of op

location ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001015

a relation between two independent continuants, the location and the target, in which the target is entirely within the location

has characteristics: transitive

has domain
independent continuant c
has range
independent continuant c
is inverse of
located in op

occupies spatial region at some timeop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000083

b occupies_spatial_region r at t means that r is a spatial region in which independent continuant b is exactly located (axiom label in BFO2 Reference: [041-002])
Is defined by
http://purl.obolibrary.org/obo/bfo.owl
has domain
independent continuant c
has range
region c
is inverse of
has spatial occupant at some time op

occurs inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000066

Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant
Is defined by
http://purl.obolibrary.org/obo/bfo.owl
has domain
process c
has range
material entity c
has sub-property chains
part of op o occurs in op
occurs in op o part of op

output ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002353

has super-properties
participates in op
has domain
continuant c
has range
process c
is inverse of
has output op

overlapsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002131

Term status
http://purl.obolibrary.org/obo/IAO_0000125
has sub-properties
has part op, part of op, spatially coextensive with op
has sub-property chains
part of op o part of op
has part op o part of op
has part op o overlaps op

part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

a core relation that holds between a part and its whole

has characteristics: transitive

has super-properties
overlaps op
has sub-properties
ends op
is inverse of
has part op

participates inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000056

a relation between a continuant and a process, in which the continuant is somehow involved in the process
Example
this input material (or this output material) participates in this process
has sub-properties
output of op
has domain
continuant c
has range
process c
is inverse of
has participant op

produced byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0003001

Term status
http://purl.obolibrary.org/obo/IAO_0000125
has domain
material entity c
has range
material entity c
is inverse of
produces op

producesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0003000

Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.
Term status
http://purl.obolibrary.org/obo/IAO_0000125
has domain
material entity c
has range
material entity c
is inverse of
produced by op
has sub-property chains
o has output op

quality ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000080

a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence
Example
this red color is a quality of this apple
has domain
quality c
has range
independent continuant c
is inverse of
has quality op

role ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000081

a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
has domain
role c
has range
independent continuant c

shows changes in species traitop back to ToC or Object Property ToC

IRI: https://w3id.org/inbio#_000122

has domain
alien species c
has range
change c

spatially coextensive withop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002379

This relation is added for formal completeness. It is unlikely to be used in many practical scenarios
has super-properties
overlaps op
has domain
species c
has range
species c
has sub-property chains
located in op o

surrounded byop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002219

Term status
http://purl.obolibrary.org/obo/IAO_0000125
has super-properties
adjacent to op
has domain
independent continuant c
has range
independent continuant c
is inverse of
surrounds op

surroundsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002221

Term status
http://purl.obolibrary.org/obo/IAO_0000125
has super-properties
adjacent to op
has domain
independent continuant c
has range
independent continuant c
is inverse of
surrounded by op

Data Properties

has amount of closely related speciesdp back to ToC or Data Property ToC

IRI: https://w3id.org/inbio#_000097

has super-properties
top data property
has domain
area c
has range
int

has amount of speciesdp back to ToC or Data Property ToC

IRI: https://w3id.org/inbio#_000096

has characteristics: functional

has range
int

has invasion success likelihooddp back to ToC or Data Property ToC

IRI: https://w3id.org/inbio#_000095

define range 0 to 1
has domain
species c
has range
double

has measurement valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000004

A relation between a scalar measurement data item and a number that quantifies it.

has characteristics: functional

has range
double

has specific namedp back to ToC or Data Property ToC

IRI: https://w3id.org/inbio#_000098

has super-properties
top data property
has domain
species c
has range
string

Annotation Properties

000130ap back to ToC or Annotation Property ToC

IRI: https://w3id.org/inbio#_000130

000132ap back to ToC or Annotation Property ToC

IRI: https://w3id.org/inbio#_000132

alt labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2004/02/skos/core#altLabel

commentap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#comment

contributorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/contributor

created byap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#created_by

creation dateap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#creation_date

creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/creator

definitionap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2004/02/skos/core#definition

deprecatedap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2002/07/owl#deprecated

don't use conceptap back to ToC or Annotation Property ToC

IRI: https://w3id.org/inbio#_000131

concepts that should not be used.\nConcept might be deleted in the next version.

editor noteap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000116

Is defined by
http://purl.obolibrary.org/obo/iao.owl
Source
GROUP:OBI:<http://purl.obfoundry.org/obo/obi>
Term status
http://purl.obolibrary.org/obo/IAO_0000122

has alternative idap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasAlternativeId

has broad synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym

has db xrefap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasDbXref

has exact synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasExactSynonym

has narrow synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym

has o b o namespaceap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasOBONamespace

has rankap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/ncbitaxon#has_rank

has related synonymap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym

has synonym typeap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#hasSynonymType

i a o 0000111ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000111

i a o 0000112ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000112

i a o 0000114ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000114

i a o 0000115ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000115

i a o 0000118ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000118

i a o 0000119ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000119

i a o 0000232ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000232

i a o 0000412ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000412

idap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#id

in subsetap back to ToC or Annotation Property ToC

IRI: http://www.geneontology.org/formats/oboInOwl#inSubset

labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#label

licenseap back to ToC or Annotation Property ToC

IRI: http://creativecommons.org/ns#license

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/rights

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/license

licenseap back to ToC or Annotation Property ToC

IRI: http://schema.org/license

n c i t a8ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_A8

n c i t n h c0ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_NHC0

n c i t p106ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P106

n c i t p107ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P107

n c i t p108ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P108

n c i t p207ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P207

n c i t p322ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P322

n c i t p325ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P325

n c i t p366ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/NCIT_P366

o b i 0001886ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/OBI_0001886

r o 0001900ap back to ToC or Annotation Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001900

sourceap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/source

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/title

TODOap back to ToC or Annotation Property ToC

IRI: https://w3id.org/inbio#_000133

Update ontology regarding the annotations

Legend back to ToC

c: Classes
op: Object Properties
dp: Data Properties

Acknowledgments back to ToC

The authors would like to thank Silvio Peroni for developing LODE, a Live OWL Documentation Environment, which is used for representing the Cross Referencing Section of this document and Daniel Garijo for developing Widoco, the program used to create the template used in this documentation.